Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq11 114 1e-20 seq202 111 1e-19 seq223 98.7 9e-16 >seq11 Length=32252908 Score = 114 bits (126), Expect = 1e-20 Identities = 465/730 (64%), Gaps = 52/730 (7%) Strand=Plus/Plus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||| | ||| ||| | ||||| | | || |||| ||| |||||| || || | Sbjct 31684762 TTGACCTTACTCCCATCCTCTGATACTTGCCTACGTTCTTCTCAGAGAAATCAGTCTTCC 31684821 Query 15987 CTTCTAATGAAATATTTTCCAT-AAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG 16045 ||| ||||||||| | ||| ||||| ||| ||||||| | | | | || | Sbjct 31684822 TTTCCG-TGAAATATTCTTCATGAAAATAAAATGGATTTTATACTCTAAACACCTTGTTA 31684880 Query 16046 CATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 ||| | || || || ||| || ||||||||||| | || || || | | Sbjct 31684881 AGCTCCAGTACCGGCATTAGTCTGTCTGCCACAAATTCAAGGTAATGCACCACTGAGGTG 31684940 Query 16106 CAGTTCATTCCTATTAATTTAACAG----GGATTGCTTCTGTTAAAAAAtttttttCTAT 16161 || ||||| || | | || |||| ||| || || || | || | | |||||| Sbjct 31684941 CAATTCATCCCAAAAAGCTTCACAGGCAAGGAAGGCCTCAGTAAGGAACTCCTGTTCTAT 31685000 Query 16162 ATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT----TAATA 16217 | || || | || ||||| ||| || || | || | ||||||| || | Sbjct 31685001 CTGAATAGCATTAACAATTATTTCTTTTTCT----TGCTTTTCTGAGGGTTTATGTACCA 31685056 Query 16218 AGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACT 16277 |||||| |||| || |||||||| ||||| || | || || | ||||| || | | Sbjct 31685057 GGTGTTTGAACACTAGGCAAGCAAAGTCACAGTGTACACCCTCAACTCTACTCATAAGTT 31685116 Query 16278 CGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAA 16337 | || |||||||| | || ||| ||||||||| ||| || | ||| ||||| | ||| Sbjct 31685117 CATTGGAAAATGTGGGGCCAGGCCTTAGTCCTCATTTCTTGAGCCAGAATATTGGCACAA 31685176 Query 16338 ATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG 16397 | ||| ||||| |||| || ||||| ||||| || || || || | || ||| Sbjct 31685177 A-GAAGCAGAACAGAAGATTCCTTCCACTGCTGCCAAGGCTACAA------CA-CGT--- 31685225 Query 16398 TTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCA 16457 |||| ||| ||| |||| || ||| |||||| || Sbjct 31685226 ------------TTTCCATC--------AGC------AGCTTCTTCTTT-ACACAGGGCA 31685258 Query 16458 TGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTA 16517 | | || || ||||| || | | | | ||| || |||| ||| ||||| || | Sbjct 31685259 TCATTTCAATGGCATTGAAGAGAAATTCCCATTCCTTAGGATCTTTAATGTAAGTGTCAA 31685318 Query 16518 TTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGC 16577 | || | |||||||||||| ||||| || || |||| || || || || ||| | || | Sbjct 31685319 TAAGGAGACTATACATTTCAGAATGTATGTTTTCCAAGGCAATTTGGAAGCCACAGAAAC 31685378 Query 16578 ATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTA 16637 | |||||| | || ||||| | ||||| ||||| | ||||||||| |||| Sbjct 31685379 AGTGAGCTTCTGTAATCCAGACTTCTTGGCTAAACCGTTCTGTCAGGTTTTCGTTCACTA 31685438 Query 16638 TTCCATCGCT 16647 | ||||| || Sbjct 31685439 TGCCATCACT 31685448 >seq202 Length=5697000 Score = 111 bits (122), Expect = 1e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || ||||||||| | | | ||||||||||| | Sbjct 3906111 TTTAAAAATCGGCATCCAAGGTGAAGACATTATCTGTGGTTTCTGACATAACTGCAAAAC 3906052 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| |||||||| ||||||||||| |||||||||||||| |||| Sbjct 3906051 GCTGATACTCCGAAACTCGTTTTTCAAAAAAATTTGTTTTCCCTTCTAATGAAATGTTTT 3905992 Query 16005 CCATAAAATCAAAAGGATT 16023 ||||||||||||| ||||| Sbjct 3905991 CCATAAAATCAAAGGGATT 3905973 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 ||| |||| |||| ||||||||||||||||| ||||| ||||||||||| |||| || Sbjct 3883230 TTTTTTTGGGATCTCTGATATAAGTATCTATTAGCAAACTGTACATTTCTGAGTGAACAT 3883171 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC 16587 |||| || || ||||| ||||| || || | ||| || Sbjct 3883170 TCTCGATAAGAATTTGAAAGCCATAGAAACAGCGAGCCTC 3883131 >seq223 Length=5023716 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || ||||| || || || ||||| ||||||||||| || Sbjct 3965824 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3965765 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||||||||| ||||| || Sbjct 3965764 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCT 3965705 Query 16379 AC 16380 || Sbjct 3965704 AC 3965703 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| || | | ||||| ||| ||| || ||||| || | || | ||| ||||| Sbjct 3966790 ATTCTCTGTTGGACTCGACATCACTCCCATCTTCTGATACTCGCCTACGCGCTTCTCAAA 3966731 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 ||| || || || ||||| | ||||||||| |||||||||||||| ||||||| Sbjct 3966730 GAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAAATCAAACGGATTTT 3966678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462461308684800