Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq449 1247 0.0 seq108 111 1e-19 seq101 87.8 1e-12 >seq449 Length=1021272 Score = 1247 bits (1382), Expect = 0.0 Identities = 1140/1431 (80%), Gaps = 26/1431 (2%) Strand=Plus/Plus Query 107216 ATGTTCTGGATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCT---CCTCCT 107272 ||||| || ||| ||||||| | |||||||||||||||||||||||||| |||| | Sbjct 934343 ATGTTTAGGCTTAATTTGTAACTGAAGGCATTTTGTTCTGTCCAAGGATCCTGCCCTCTT 934402 Query 107273 CCACCTTGCCTGTGCCCAAACTCT-CCTGATCTCCCATCCCATGAAGATGGCTGGGTGGA 107331 || |||| || ||||| ||||||| |||| ||||| ||| ||||| ||| || |||||| Sbjct 934403 CCTCCTTCCCCGTGCCTAAACTCTACCTGGTCTCCGTTCC-ATGAAAATGTCTTGGTGGA 934461 Query 107332 AGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCG 107391 ||||||| | |||| |||||| ||||| || ||||||| ||||| | Sbjct 934462 AGAAGAAATTCTGCC------------TGTGGGTCCTGGTCTTCTATATGGTGCTGACTC 934509 Query 107392 TTGTTTCTCTGAGACTTTCCCT-CA--GGTTTAAATGTGATGTAGATTCCTTGGATCTGG 107448 || || | ||| ||||| | || |||| || ||||| | | | ||||||||| Sbjct 934510 TTATTGCAGTGAAGCTTTCTCAACAACGGTTCAAGTGTGACTTTCAAAACCTGGATCTGG 934569 Query 107449 AGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATG--TTGTACAATAGCCTGAAGCT 107506 |||| || ||| || || || |||||| | ||| |||||||| ||||||||| Sbjct 934570 GCTCCAAGGGCTTGCAAAGCAGGCGCTGTAG--AAATGCCTTGTACAAGTCCCTGAAGCT 934627 Query 107507 GCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGT 107566 || ||| |||| |||||||||||||||| |||||| || || || |||| |||||| Sbjct 934628 ACCTGCAGAGAGCTCCATCAACTGTTCTGCGATCACCCGGGGAGATGAGGAGGCAGTGAC 934687 Query 107567 CCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTA 107626 ||||| || ||| ||||||||| | || || ||||| | ||| | | | || | Sbjct 934688 TCAGGCTCTTCTAAGCAACCTGGAGATCAAAAACAAGCGAACACCTTTGATGGACATTGA 934747 Query 107627 TTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTT 107686 ||||||||| | |||||| ||||||||| ||| |||||| | |||||||||||| |||| Sbjct 934748 CTACCTCAACCTGACCAGAAACTGTGAGCACTTTAAGGCCAACAGGAAGTTCATAGAGTT 934807 Query 107687 CCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAA 107746 || ||||| |||||||| |||||||| ||||| || ||||| || |||||||||||||| Sbjct 934808 TCCGCTGAGCAAAGAAGAACTAGACTTTCCCATCGCATACTCTATTGTGGTCCATGAGAA 934867 Query 107747 GATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGT 107806 ||||||||| |||||| ||||||||||| | ||||||||||| ||||||||||| || | Sbjct 934868 GATTGAAAATTTTGAAAGGCTGCTGCGAACTGTGTATGCCCCACAGAACATATATTGCAT 934927 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 ||||||||||| |||||| ||| |||||||||||||| |||||||| |||||||| || Sbjct 934928 CCACGTGGATGAGAAGTCTCCACTAACTTTCAAAGAGGCAGTCAAGGCGATTATTTCATG 934987 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 |||||| || ||||||||||||||||| | || |||||| ||||| || |||||||| Sbjct 934988 CTTCCCAAACGTCTTCATGGCCAGTAAACTCGTTAAGGTGGTCTATGCATCTTGGTCCAG 935047 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTA 107986 |||||| |||||||||||||| ||||||||||||||||||||| |||||||||||| || Sbjct 935048 AGTGCAGGCTGACCTGAACTGCATGGAAGACTTGCTCCAGAGCAAAGTGCCATGGAAATA 935107 Query 107987 CTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGC 108046 ||||||||||||||| ||||| ||||| || |||||||||||||| |||||||| | || Sbjct 935108 CTTACTGAATACATGTGGGACGGACTTTCCTATAAAGACCAATGCTGAGATGGTACAAGC 935167 Query 108047 CCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaa 108106 |||||||||||| || || ||||| | ||||| || ||| ||||||||| | | |||| Sbjct 935168 CCTCAAGATGTTAAATGGGAAGAATAACATGGAATCAGAGATACCTTCTGCGCCTAAAAG 935227 Query 108107 aaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTAC-CAGCAAGATGA 108165 ||||||||||||||| ||||||| ||| ||||||||| || || | ||||| || Sbjct 935228 AAATCGCTGGAAATATCGCTATGTGGTAACAGACACATTGCGTATGACAAACCAAGA-GA 935286 Query 108166 AGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTC 108225 | | ||||| ||||||||| |||||||||||||||||| ||||||| ||||||| || | Sbjct 935287 AAGGTCCTCCTCCTGATAATATACCCATGTTCACAGGGAGTGCCTATATTGTGGCTTCAC 935346 Query 108226 GAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCA 108285 || || ||||||| |||||| | ||||||||| |||| |||| |||| ||||||| Sbjct 935347 GAAGTTTCATCCAACAAGTCTTACAGAACCCTAAAGCCCAGCAACTGATTGAGTGGGTCA 935406 Query 108286 AAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGC 108345 |||||||||| ||||| |||||||||||||||||||| ||||| ||||| || ||||||| Sbjct 935407 AAGACACCTACAGCCCTGACGAACACCTCTGGGCCACGCTTCACCGTGCACCATGGATGC 935466 Query 108346 CTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 108405 |||||||||| || |||| | |||||| || |||| ||| || ||||||| || || Sbjct 935467 CTGGCTCTGTCCCCTTCCACACTAAGTATGACTTCTCGGACGTGGCTGCCATTGCTAGAT 935526 Query 108406 TCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCT 108465 | || |||||| || |||| ||||| || || | || |||||| |||||| |||| ||| Sbjct 935527 TGGTGAAGTGGGAGAACCATGAGGGCGACGTGAACAAGGGGGCACCTTATCCACCTTGCA 935586 Query 108466 CTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCC 108525 |||||| ||| | | |||| |||||||||| ||||| || |||||| ||||||| || | Sbjct 935587 CTGGAACCCACCAGCGGGCTGTCTGCATTTATGGGGCTGGAGACCTGCACTGGATGCTGC 935646 Query 108526 AGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGT 108585 || |||||||||| || || |||||||||||||| | ||||||||| | | || |||| Sbjct 935647 AGCACCATCACCTATTTGCCAACAAGTTTGACCCAAAAGTGGATGATTATGCTCTCCAGT 935706 Query 108586 GCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 |||||||||||||| |||| || |||||||| ||||| |||||||| |||| Sbjct 935707 GCTTAGAAGAGTACTTACGCCACAAGGCCATTTATGGTACTGAACTCTGAG 935757 >seq108 Length=12252355 Score = 111 bits (122), Expect = 1e-19 Identities = 202/290 (70%), Gaps = 7/290 (2%) Strand=Plus/Minus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| ||| ||||| || |||||||| || | |||||||||||| | ||| | Sbjct 7341893 GAGTGGGCCAAGGACACTTACAGCCCCGATGAGTATCTCTGGGCCACCATCCAGAGGATG 7341834 Query 108336 CCGTGGATGCC--TGGCTCTGTTCCTAGCCA-CCCCAAGTATCACATCTCAGACATGACT 108392 ||| |||||| ||| | | ||| || | ||||||||| || | || |||||| Sbjct 7341833 CCG--GATGCCCCTGGTGC-GCTCCCCGCTAGCCCCAAGTACGACTTGTCGGACATGCAG 7341777 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 ||||||| | ||||||||||||| || ||||| || |||| || ||| || || Sbjct 7341776 GCCATCGTGCGCTTCGTCAAGTGGCACTATTTTGAGGGCGACGTCACCAAGGGCGCCCCA 7341717 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 || |||||||| || | ||| | | | | ||| | | ||| || || |||||| Sbjct 7341716 TACCCACCCTGCAGCGGGGTGCATGTGCGCTCTGTGTGCGTCTTCGGTGCTGGAGACCTG 7341657 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC-CCGA 108561 | ||||| || | | |||||| | || || |||||||||||| |||| Sbjct 7341656 AAGTGGATGCTGCGCCAGCATCACTTGTTTGCCAACAAGTTTGACACCGA 7341607 >seq101 Length=13182164 Score = 87.8 bits (96), Expect = 1e-12 Identities = 254/383 (66%), Gaps = 16/383 (4%) Strand=Plus/Plus Query 107696 TAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAA 107755 |||||||||| ||| || || | |||||| ||||| ||||| | || ||| | Sbjct 4049630 TAAAGAAGAGGCAGAATTTCCTTTGGCCTACGTCATGGTCATCCATCATAATTTTGGTAC 4049689 Query 107756 CTTTGAACGGCTGCTGCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGTCCACGTG 107813 ||||| | | || | | || | || |||||| |||| || ||||| | |||||| Sbjct 4049690 CTTTGCAAGACTCTTCAGGGCAATTTACATGCCCC--AGAATATCTACTGCATTCACGTG 4049747 Query 107814 GATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAGGCCATTATTTC-CTGCTTCC 107871 |||| |||| || ||| || ||| ||| |||| || || | |||| | |||||||| Sbjct 4049748 GATGAGAAGGCCACAGTTGAATTTAAAA-AGGCAGTGGAG-CAATTACTGGACTGCTTCC 4049805 Query 107872 CCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGC 107931 | |||| ||| |||| ||| ||| || || || |||| || || | | Sbjct 4049806 CAAATGCGTTCCTGGCTTCCAAGATGGAGCCAGTCGTCTATGGGGGGATTTCTAGGCTCC 4049865 Query 107932 AAGCTGACCTGAACTGTATGGAAGAC----TTGCTCCAGAGCTCAGTGCCATGGAAGTAC 107987 | |||||||||||||| || ||| ||| ||||| ||||| ||||| || Sbjct 4049866 AGGCTGACCTGAACTGCGTGAGGGACCTGGCTGCCTCAGAG----GTGCCCTGGAAATAT 4049921 Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047 | | || || |||||| |||||||||| | || ||||| ||||| || | | | Sbjct 4049922 GTGATCAACACCTGCGGGCAAGACTTCCCCCTGAAAACCAACAAGGAGATAGTTCAGTAC 4049981 Query 108048 CTCAAGATGTTGAAGGGTAAGAA 108070 || || ||| ||||| || || Sbjct 4049982 CTGAAAGGGTTCAAGGGGAAAAA 4050004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348231583996032