Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq94 174 2e-38 seq223 123 2e-23 seq11 114 1e-20 seq2236 89.7 5e-13 >seq94 Length=13213440 Score = 174 bits (192), Expect = 2e-38 Identities = 412/614 (67%), Gaps = 19/614 (3%) Strand=Plus/Plus Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 14266 ||||| ||||| || | ||| |||||||| ||| ||||||| | |||||||| | || Sbjct 4997831 GCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGTTCACTGGAAAATGTGAGGCCA 4997890 Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 14326 |||| || | ||| ||| || | ||| ||||||| || || || | ||| |||| || Sbjct 4997891 GGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACTGGAGAAGA---TT 4997947 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14386 || || ||||| ||||| |||| | | ||||| | | || ||||||| | Sbjct 4997948 CCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTAGGTAATTTCTTTGTTCCCAGCC 4998007 Query 14387 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446 || ||||| || | | || || | | | |||||||||||| ||||| | Sbjct 4998008 CAACGCAAGGCCCAGTCTGCTGCCTTCTTTACACAGGGCATTGTTTCAATGGCATTGATG 4998067 Query 14447 AAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14505 | | |||| || |||| | ||| || ||| |||||||| | ||||||||||| Sbjct 4998068 AGAAATTCCCATTCCTTAGGATCTTTAA-----TGTGTCAATAAGGAGACTATACATTTC 4998122 Query 14506 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14565 ||| |||||||||||||| || || || || ||||| ||||| | ||||||| || Sbjct 4998123 AGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTG 4998182 Query 14566 TACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14625 || ||| | ||| | || ||| |||||||| ||| | |||||||| || ||||| Sbjct 4998183 GACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACTGTGCCATCACTTGCAGCAAA 4998242 Query 14626 AAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCG 14683 || ||| || ||| | |||||||| ||| ||| | || || ||| | Sbjct 4998243 GAAGGCCAGAACATGGGAT--ATAAAGTAACTCTCCTCAGACTTAAGGGCTTCCCAGT-- 4998298 Query 14684 GCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTT 14741 |||||| || || |||||||| | || | | ||||| ||| |||||| | Sbjct 4998299 GCTAAATGTCTTTGGAAAGATCAATCTCCTTGGTGTTTCAAAAGGAAGCCTGAGCTTTCT 4998358 Query 14742 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATGTTT 14801 || |||| ||| || || | ||| | ||||||||| ||||| | | || || || Sbjct 4998359 TAGACATCTGCCAAATGTCATGGTATTCAACAGGAAAAACGACAAAGC-CGCAGGTG-TT 4998416 Query 14802 CTTTAAGAATTGGT 14815 || |||| | |||| Sbjct 4998417 CTCTAAGCAATGGT 4998430 >seq223 Length=5023716 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || ||||| || | || ||||||| ||||||||| | Sbjct 3965826 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 3965767 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||||| || || || || |||||||| ||||| |||||||| ||||| | Sbjct 3965766 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGG 3965707 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 3965706 CTACAACACGTTCTCC 3965691 Score = 93.3 bits (102), Expect = 4e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 ||| || ||||||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 3962634 AATATAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 3962575 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | |||||||| Sbjct 3962574 GAAGCCATAGAAACAGCGAGCTTCTG 3962549 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| || ||||| || | || | || |||||||||||||| || ||| Sbjct 3966774 GACATCACTCCCATCTTCTGATACTCGCCTACGCGCTTCTCAAAGAAGTTAGTCTTCCCT 3966715 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| ||||| |||||||||||||| |||||| Sbjct 3966714 TCCAGTGAAATATTCTCCATAAAATCAAACGGATTT 3966679 >seq11 Length=32252908 Score = 114 bits (126), Expect = 1e-20 Identities = 284/434 (65%), Gaps = 44/434 (10%) Strand=Plus/Plus Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 || ||||| || | || || ||||| ||||| || | |||||| ||||||| |||||| Sbjct 31685056 AGGTGTTTGAACACTAGGCAAGCAAAGTCACAGTGTACACCCTCAACTCTACTCATAAGT 31685115 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 || || |||||||| || ||| | | ||||| ||| || | ||| ||||||| | Sbjct 31685116 TCATTGGAAAATGTGGGGCCAGGCCTTAGTCCTCATTTCTTGAGCCAGAATATTGGCACA 31685175 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14365 || || | ||| |||| ||||| || ||||| || || |||| | |||| |||| Sbjct 31685176 AA-GAAGCAGAACAGAAGATTCCTTCCACTGCTGCCAAGGCTACAACACGTTTTCCA--- 31685231 Query 14366 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14425 || ||| || || || |||| | | | Sbjct 31685232 --------------------------TC-AGC------AGCTTCTTCTTTAC-ACAGGGC 31685257 Query 14426 ATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 14485 || ||||||| ||||| || | | |||| || |||| | | |||||| || ||| Sbjct 31685258 ATCATTTCAATGGCATTGAAGAGAAATTCCCATTCCTTAGGATCTTTAATGTAAGTGTCA 31685317 Query 14486 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAA 14545 ||||| | |||||||||||||| ||||||||||||| || || || || ||| | ||| Sbjct 31685318 ATAAGGAGACTATACATTTCAGAATGTATGTTTTCCAAGGCAATTTGGAAGCCACAGAAA 31685377 Query 14546 CATCTAGCTTCTG---ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTA 14602 || |||||||| ||| || ||| | ||| | ||| | || ||||| || Sbjct 31685378 CAGTGAGCTTCTGTAATCCA---GACTTCTTGGCTAAACCGTTCTGTCAGGTTTTCGTTC 31685434 Query 14603 ACTATACCATCACT 14616 ||||| |||||||| Sbjct 31685435 ACTATGCCATCACT 31685448 >seq2236 Length=6892 Score = 89.7 bits (98), Expect = 5e-13 Identities = 212/316 (67%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 11641 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCG 11700 |||| ||| || |||||| | |||| |||||| | |||| |||||| || | Sbjct 2865 CATCCAAAACTTGAACTTCCTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTG 2806 Query 11701 CCACTCGATCG-CCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACT 11759 | | ||||| ||| ||||| | |||| | | ||| ||| ||||| | || ||| Sbjct 2805 CAATCCGATCAACCTTTTTTACTCC-AAATTTTTCTTTGCCAAAATTAAACAGTACAACA 2747 Query 11760 CCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATAT 11819 |||| || || || |||||||||||||| || || |||||| ||||||| || | | Sbjct 2746 CCAACATTTCCTCTGTAATCTTCATCTATCACACCAGCTCCTACATCTATGAAATGTTTT 2687 Query 11820 AACGAAAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTT 11879 | | ||||| | ||| |||| || | ||||||| | |||| | || Sbjct 2686 TCAGCCAAGCCAGAACGTGGAGCTACTCTTTCATAACACCCCTAAGGAAGGGCTATCTGA 2627 Query 11880 ATATCAGTTTTAACTAAAATTCTTTCT--TTTGATTTAACGATATAATCATAAGCACTAT 11937 || || ||||| || || |||||| | | | |||| |||||||||||||||| | Sbjct 2626 ATGTCTGTTTTCAC--AAGGGCTTTCTCCATGGGTGGAACGGTATAATCATAAGCACTGT 2569 Query 11938 ATAAATCATATCCTGC 11953 | || || || ||||| Sbjct 2568 ACAAGTCGTAGCCTGC 2553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482292734922240