Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq94 174 1e-38 seq51 123 2e-23 seq223 120 3e-22 seq44 98.7 9e-16 seq202 95.1 1e-14 >seq94 Length=13213440 Score = 174 bits (192), Expect = 1e-38 Identities = 313/451 (69%), Gaps = 20/451 (4%) Strand=Plus/Plus Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 ||||| ||||| ||||| ||||| ||||| || | |||||| | |||||||| | || Sbjct 4997831 GCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGTTCACTGGAAAATGTGAGGCCA 4997890 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 |||| || | ||| ||| || | ||| ||||| | ||||| |||| || |||| || Sbjct 4997891 GGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACTGGAGAAGA---TT 4997947 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA------TACCTTGTTGCTAGAT 11806 || ||||| |||||||| ||||| || || ||||| || | | ||||| | || Sbjct 4997948 CCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTAGGTAATTTCTTTGTTCCCAGC- 4998006 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 ||| |||||| || ||| ||| ||||| || ||||||||| || || || Sbjct 4998007 --CCAACGCAAGGCCCAGTCTGCTGCCTTCTTTACACAGGGCATTGTTTCAATGGCATTG 4998064 Query 11867 A--ATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 | | |||| | || || || |||| ||| |||| || || | | |||||||| Sbjct 4998065 ATGAGAAATTCCCATTC-CT-TAGGATCT-TTA---ATGTGTCAATAAGGAGACTATACA 4998118 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 |||| ||||| || |||||||| || ||||| || ||||||||||| || || |||| | Sbjct 4998119 TTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAA 4998178 Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 ||| || || ||| | ||| | | || ||||| || | |||||||| | | Sbjct 4998179 TCTGGACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACTGTGCCATCACTTGCAG 4998238 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTA 12075 |||| || || || | ||| ||||||||| Sbjct 4998239 CAAAGAAGGCCAGAACATGGGATATAAAGTA 4998269 >seq51 Length=18525102 Score = 123 bits (136), Expect = 2e-23 Identities = 285/425 (67%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 11372 TTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAG 11431 |||||||| || || ||||| |||| ||||| ||| ||| |||| ||||| | || Sbjct 17119797 TTAGTCTTCCCCTCCAGTGAAATATTCTCCACAAAATCAAATAGATTTTATACTCTAAAC 17119856 Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || | ||| |||| | || | || ||| ||| | |||||||| || ||||| | Sbjct 17119857 ACCTAGTCAAAACCCCATTCCAGCATTAGTCTGTCTACCACGAATTCAATGTACTGTTCC 17119916 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCAC-CGGAATAGCAACTGTCAAAAA----CT 11546 ||||| |||||||| || ||||| | | || || | | ||| ||| || Sbjct 17119917 ATTAACTTGCAATTCATTCCAATAAGCTTTGCACGCAAGACC-----TCAGAAAGGAGCT 17119971 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAAC-TTCCTTAGATGGTGGA 11605 ||| |||| | |||| ||| || ||||| | ||| | || || | ||| Sbjct 17119972 CCTGTTCTGTCCTAACAGCAGTAACAATTATTT-CATTAACTCATTTCTCCAAAGGTTTG 17120030 Query 11606 TGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTT 11665 |||| | | | || |||| || ||||| || || |||||||| || ||||| || Sbjct 17120031 TGTACCTGGTATGTGAAAATTAGTCAAGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTG 17120090 Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 | |||||| | |||||||| | || ||||| |||| | ||| || | ||| ||| Sbjct 17120091 ACAAGTTCAGTGGAAAATGTGAGGCCAGGCATTAATCTTTATTTCTTGAGCCAGGGTATC 17120150 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 ||||| ||| || | || || ||||| ||||| ||||||||||||| || || ||| Sbjct 17120151 AATGCAAAGGAAGCAAAGAATAAGATTCCTTCCACTACTGCAAATGCTACAACACTCTCT 17120210 Query 11786 CCATA 11790 || || Sbjct 17120211 CCTTA 17120215 >seq223 Length=5023716 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | || ||||||| ||||||||| || Sbjct 3965824 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3965765 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| || || |||||||| ||| Sbjct 3965764 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCT 3965705 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 3965704 ACAACACGTTCTCC 3965691 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||| | | ||| ||||| || | | |||||||||||| ||||| || |||||||| || Sbjct 3962640 ATCTTTAATATAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3962581 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 ||||| || ||||||||||| || || |||| | ||| || || Sbjct 3962580 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAACCTGGACTTC 3962536 >seq44 Length=20396770 Score = 98.7 bits (108), Expect = 9e-16 Identities = 118/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 37114 TCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATAT 37173 |||||| |||||| ||| |||| |||||| || || || || |||| | || || Sbjct 12601407 TCTCTCCATAGGTCTGGTCTTAC---CTGAAATTCCCCTGACAAGACTCGGCGAGTGTAG 12601463 Query 37174 ATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCA 37233 || ||||| ||||| | |||||| ||||||||||| | | ||| |||| || || ||| Sbjct 12601464 ATGTTGCTGGTATAAGCTTCAATAGACTCATTATTCCCAAGTATCTGAGCAGTTGAAGCA 12601523 Query 37234 GTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCAT 37273 ||||||||||| || || || | || ||||| | |||| Sbjct 12601524 GTAGGCATTGGGGCAATAAGTAAACTGTTTCTTACACCAT 12601563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | |||||||| ||||| | ||||| || || |||| | || Sbjct 12623880 GTCCCAGCATTGAAGAGGGTAGGAGAAGCATGAGTAAACCACTTCTCAGACAGAAGGTTG 12623939 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| || || |||| ||||| | |||||| || | |||||||||||| ||| Sbjct 12623940 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCGACAGATACCCTCATCAGC 12623999 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||| ||||||||||| Sbjct 12624000 ATATGCTGTGGTCTTTC 12624016 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/150 (74%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| ||||||||||| || ||||| | || |||| | | | || | || Sbjct 12594163 TCCAGCCGTAGAAATGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 12594222 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATAC--A 36980 ||| || || ||||||||||| || || ||||| || ||||||| ||| | ||| Sbjct 12594223 TCAGAGACTGGCTTTGATCTATGAAAGCCCCTCTCTCAGCTGCCA--TCTTGAGTACGGT 12594280 Query 36981 TTTTTGAGATATCTCCCAAACCGTTTTATA 37010 ||||||||| || ||||| ||||| ||||| Sbjct 12594281 TTTTTGAGAAATTTCCCACACCGTCTTATA 12594310 >seq202 Length=5697000 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | ||| |||||||||| ||||| ||||||||||| |||| ||| || ||| Sbjct 3883220 ATCTCTGATATAAGTATCTATTAGCAAACTGTACATTTCTGAGTGAACATTCTCGATAAG 3883161 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 |||||||| ||||||||||| || ||||||| Sbjct 3883160 AATTTGAAAGCCATAGAAACAGCGAGCCTCTG 3883129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468473449681920