Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq316 129 5e-25 seq132 82.4 7e-11 >seq316 Length=2809289 Score = 129 bits (142), Expect = 5e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 ||||| |||| ||| ||||||| || || || |||||||||||||| ||||| || || Sbjct 1685911 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 1685970 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 ||||| ||||||||||| | ||||||||||||||||| ||||| || || || || Sbjct 1685971 ACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGACAGGAGAGTTCACCATTCACC 1686030 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGC 21166 ||||| ||||| || | | || || || || || |||||| | | ||||| || Sbjct 1686031 ACGTAGAACTGGCAAAGGGCATGGCAGGGTGGCAGGGCCATCTGAGGAAGGTCTGC 1686086 >seq132 Length=9596125 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20975 AAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCT 21034 ||||| || || | ||||| ||| ||| || ||| | || || ||||| |||| Sbjct 8761747 AAAGTTACCTGGCTTTAGGCCTGTGGTGTGTGCCGTCATGCAGGTGAGCAGGGCACAGCT 8761806 Query 21035 GGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGA 21094 ||| || || || | ||||| ||||||||||| ||||| ||||||| ||||||||||| Sbjct 8761807 GGCAATATTGAAAAGCACCCCCAGGCCCATGTCTCCGGACTTCTGGTAAAGCTGGCAGGA 8761866 Query 21095 CAG 21097 ||| Sbjct 8761867 CAG 8761869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427730287856640