Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq94 212 9e-50 seq11 190 3e-43 seq223 141 1e-28 seq51 138 2e-27 seq202 113 6e-20 seq44 111 2e-19 >seq94 Length=13213440 Score = 212 bits (234), Expect = 9e-50 Identities = 413/603 (68%), Gaps = 18/603 (3%) Strand=Plus/Plus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 ||||| |||| || || || || ||||| | || || ||||| ||| | ||||| Sbjct 4997813 TGTTTGAACAGCAGGTGAGCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGTTCA 4997872 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 ||||||| ||||| || |||| || | | || || ||||| ||||| || ||||| Sbjct 4997873 CTGGAAAATGTGAGGCCAGGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCAAAA 4997932 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 || | || |||||||||||| ||||| |||||||| || | |||||||| || | Sbjct 4997933 GAACTGGA---GAAGATTCCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTA---G 4997986 Query 50125 GCGCTGTCAT-GTATCCA---CTTTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGC 50178 | | || | || ||| | | ||||| || || ||| |||||||| ||| Sbjct 4997987 GTAATTTCTTTGTTCCCAGCCCAACGCAAGGCCCAGTCTGCTGCCTTCTTTACACAGGGC 4998046 Query 50179 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 50238 || ||||| |||||||| | |||| | | ||| ||| |||||||| || || Sbjct 4998047 ATTGTTTCAATGGCATTGATGAGAAATTCCCATTCCTTAGGATCTTTAAT----GTGTCA 4998102 Query 50239 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 50298 || | |||||||||||||| ||||| |||||||| ||||| || || || || |||||| Sbjct 4998103 ATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 4998162 Query 50299 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACT 50358 || | || || |||||||| |||||| | ||| || || | | |||||||||||| Sbjct 4998163 CAGCGGGCTTCTGTAATCTGGACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACT 4998222 Query 50359 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGT 50418 | || ||||| || ||||| || |||| ||||| |||||| | | || | | Sbjct 4998223 GTGCCATCACTTGCAGCAAAGAAGGCCAGAACATGGGATATAAAGTAACTCTCCTCAGAC 4998282 Query 50419 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTA-CTTCTTCCACTGTCCAAAA 50477 | || | ||| | | || ||||| || | ||| | || ||| | | ||||| Sbjct 4998283 TTAAGGGCTTCCCAGTGCTAAATGTCTTTGGAAAGATCAATCTCCTTGGTGT-TTCAAAA 4998341 Query 50478 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAAC 50537 || |||| || || ||| |||| | ||| |||||||| |||| | || |||| || Sbjct 4998342 GGAAGCCTGAGCTTTCTTAGACATCTGCCAAATGTCATGGTATTCAACAGGAAAAACGAC 4998401 Query 50538 AAA 50540 ||| Sbjct 4998402 AAA 4998404 >seq11 Length=32252908 Score = 190 bits (210), Expect = 3e-43 Identities = 293/425 (69%), Gaps = 35/425 (8%) Strand=Plus/Plus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 ||||| |||| | || || || || ||||| | |||||| ||||||| || ||||| Sbjct 31685059 TGTTTGAACACTAGGCAAGCAAAGTCACAGTGTACACCCTCAACTCTACTCATAAGTTCA 31685118 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 |||||||| ||| | || ||| |||| || | || || ||||| ||||| | | |||| Sbjct 31685119 TTGGAAAATGTGGGGCCAGGCCTTAGTCCTCATTTCTTGAGCCAGAATATTGGCACAAA- 31685177 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 || ||||| ||||||||||||| ||||| || ||||| |||| | | ||||| | Sbjct 31685178 GAAGCAGAACAGAAGATTCCTTCCACTGCTGCCAAGGCTACAACACGTTTTCCATCA--- 31685234 Query 50125 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 50184 || | |||||| |||||||| |||||| || Sbjct 31685235 --GCAG-----------------------------CTTCTTCTTTACACAGGGCATCATT 31685263 Query 50185 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 50244 || |||||||| |||||| | | ||| ||| |||||||| ||||| || || | Sbjct 31685264 TCAATGGCATTGAAGAGAAATTCCCATTCCTTAGGATCTTTAATGTAAGTGTCAATAAGG 31685323 Query 50245 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 50304 |||||||||||||| ||||| |||||||| | ||| || || || || ||||||| | Sbjct 31685324 AGACTATACATTTCAGAATGTATGTTTTCCAAGGCAATTTGGAAGCCACAGAAACAGTGA 31685383 Query 50305 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCG 50364 || || |||||| |||||| | ||| ||||| | | ||||| |||||||| || Sbjct 31685384 GCTTCTGTAATCCAGACTTCTTGGCTAAACCGTTCTGTCAGGTTTTCGTTCACTATGCCA 31685443 Query 50365 TCACT 50369 ||||| Sbjct 31685444 TCACT 31685448 >seq223 Length=5023716 Score = 141 bits (156), Expect = 1e-28 Identities = 107/126 (85%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| |||||||||||||| || ||||| || || || || | Sbjct 3965826 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 3965767 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| |||||||| || |||||||||||||||||||| ||||| ||||||| Sbjct 3965766 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGG 3965707 Query 50102 CAACAA 50107 | |||| Sbjct 3965706 CTACAA 3965701 Score = 105 bits (116), Expect = 1e-17 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| ||||||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 3962640 ATCTTTAATATAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3962581 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | ||| || |||| ||| |||||| Sbjct 3962580 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAACCTGGACTTCT 3962535 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 49604 TTATGTTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAA 49660 || |||| |||| ||||| |||| | | ||| ||| ||| | || ||||| | Sbjct 3966827 TTCTGTTCATTTAGAAGTCCGCATCCAAGGTGAAAGAATTCTCTGTTGGACTCGACATCA 3966768 Query 49661 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 49720 ||||||| || || || || || || || || || || || ||||| || ||||||| || Sbjct 3966767 CTCCCATCTTCTGATACTCGCCTACGCGCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTG 3966708 Query 49721 ATATATTTTCCATGAAATCAAACGGATT 49748 | ||||| ||||| |||||||||||||| Sbjct 3966707 AAATATTCTCCATAAAATCAAACGGATT 3966680 >seq51 Length=18525102 Score = 138 bits (152), Expect = 2e-27 Identities = 233/341 (68%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || |||||||| | |||||| ||||| || | ||||| ||||||| ||||| Sbjct 17120055 CAAGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTGACAAGTTCAGTGGAAAATGTGAGG 17120114 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||||| | || || ||||| ||| | ||||| || || | || ||| Sbjct 17120115 CCAGGCATTAATCTTTATTTCTTGAGCCAGGGTATCAATGCAAAGGAAGCAAAGAATAAG 17120174 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATC 50139 |||||||| ||| | ||||| || |||| |||||||| || ||| Sbjct 17120175 ATTCCTTCCACTACTGCAAATGCTACAACACTCTCTCCTTA----------------ATC 17120218 Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199 || | ||| || |||||||| || ||| | |||| | |||| |||||||| ||| Sbjct 17120219 CAACACAAGGACCAGTCTGCCTTCTTCTTCACAAAGGGCACCATTTCAATGGCATTGAAG 17120278 Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259 | | | | ||| ||| ||||| |||||||| || | ||||||| ||||| Sbjct 17120279 ACAAATTCCCATTCCTTAGGATCTT-----TAAGTATCAATAATGAGACTATCTATTTCA 17120333 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 50300 ||| | |||||||| |||||||| || || | |||||||| Sbjct 17120334 GAACGGATGTTTTCCATGGCCATTTGGAAGTCATAGAAACA 17120374 >seq202 Length=5697000 Score = 113 bits (124), Expect = 6e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| |||||||| ||||| ||||| | ||| || Sbjct 3890747 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGGCCTCTCTTCTTC 3890688 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| || || | ||||| || ||||| ||||| ||||||||||| || |||||||| Sbjct 3890687 AGCCAGAAAATCGCAGCAAAAGATCCAGAGAAGAAAATTCCTTCTACAGCCGCAAAGGCT 3890628 Query 50104 AC 50105 || Sbjct 3890627 AC 3890626 Score = 95.1 bits (104), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 50456 CTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 50515 |||| ||||||||||||||||| ||||||| ||| | ||||||||| ||||| || || Sbjct 3875708 CTACCTCTTCCACTGTCCAAAAGGATGCCTGTGCTTGTTTATACATCTTCCAAATATCCG 3875649 Query 50516 GATATTGGATTGGGAAAATAACAAATC 50542 | || ||||||||||| || ||||||| Sbjct 3875648 GGTACTGGATTGGGAAGATGACAAATC 3875622 >seq44 Length=20396770 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| ||||||||||||||||| || |||||| ||| | || || || || ||||| | Sbjct 12594163 TCCAGCCGTAGAAATGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 12594222 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 12594223 TCAGAGACTGGCTTTGATCTATGAAAGCCCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 12594282 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 |||| | ||||||||| | || ||||||| |||| | || || |||| Sbjct 12594283 TTTGAGAAATTTCCCACACCGTCTTATAAAGCTGCTTCAAGTCATCGGGAA 12594333 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| ||||| || ||||||||||| || | ||||||||| |||| | || Sbjct 12616089 ACTCGTTTCATGAAGAGGTCTGGAATCCAAAGGGCAAAAAATAGATCCCTGGCACGCTGT 12616148 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || ||||| || ||||| || | ||| |||||| | | || || ||||||| || Sbjct 12616149 TCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCATGGC 12616208 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCG 80087 |||||||| || || | |||| ||||| Sbjct 12616209 TCCAAGTAAATAGCAAATGCTCCAGGTCG 12616237 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 ||| | || || ||||| || | |||||||||||| || |||||||| || |||||||| Sbjct 12623874 CGATTGGTCCCAGCATTGAAGAGGGTAGGAGAAGCATGAGTAAACCACTTCTCAGACAGA 12623933 Query 80389 AGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGC 80448 || ||||| || |||||||| | || ||||| || ||||| || || | || | | Sbjct 12623934 AGGTTGTATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCGACAGATACCCTC 12623993 Query 80449 ATTAACATGTGCTGAGGTCTTTCA 80472 || | ||| ||||| ||||||||| Sbjct 12623994 ATCAGCATATGCTGTGGTCTTTCA 12624017 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| |||||||| || ||||| |||| |||||||| || || |||||||| | ||| | Sbjct 12601427 TACCTGAAATTCCCCTGACAAGACTCGGCGAGTGTAGATGTTGCTGGTATAAGCTTCAAT 12601486 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 || |||||||| || | || ||||||||||| || || ||||| || || | | ||| Sbjct 12601487 AGACTCATTATTCCCAAGTATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 12601546 Query 79179 ACTATTTCTAAGACCGTA 79196 ||| ||||| | ||| || Sbjct 12601547 ACTGTTTCTTACACCATA 12601564 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || ||||| ||||| || || | || | ||||||||| || || || ||||| ||| Sbjct 12613395 TAGGTTTCGTAAGGGCCAAGCTCCTTAGCCAGTTCACAACTGGCTTCCAAAGCTCCATAA 12613454 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || || | ||||| || || || ||| | || ||||| ||||| Sbjct 12613455 TAAATGGTTTCAAATATTTGTTTATTCAGTAACTGGGCCTCTGGACTCTCAAAAGGATAT 12613514 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | || || || || ||||||| ||||| || ||||| || || || | ||| | Sbjct 12613515 CTCATCAGGATGAAAGCATCTGCTAGACCTTGGACCCCAATTCCAATGGGACGATGGCGT 12613574 Query 79480 TTATTAGA 79487 ||||| || Sbjct 12613575 TTATTTGA 12613582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718190077739520