Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq94 178 1e-39 seq223 129 6e-25 seq11 114 1e-20 seq2236 93.3 4e-14 >seq94 Length=13213440 Score = 178 bits (196), Expect = 1e-39 Identities = 413/614 (67%), Gaps = 19/614 (3%) Strand=Plus/Plus Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 ||||| ||||| || | ||| |||||||| ||| ||||||| | |||||||| | || Sbjct 4997831 GCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGTTCACTGGAAAATGTGAGGCCA 4997890 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 |||| || | ||| ||| || | ||| ||||||| ||||| || | ||| |||| || Sbjct 4997891 GGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACTGGAGAAGA---TT 4997947 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 || || ||||| ||||| |||| | | ||||| | | || ||||||| | Sbjct 4997948 CCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTAGGTAATTTCTTTGTTCCCAGCC 4998007 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 || ||||| || | | || || | | | |||||||||||| ||||| | Sbjct 4998008 CAACGCAAGGCCCAGTCTGCTGCCTTCTTTACACAGGGCATTGTTTCAATGGCATTGATG 4998067 Query 14115 AAATATTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14173 | | ||||| || |||| | ||| || ||| |||||||| | ||||||||||| Sbjct 4998068 AGAAATTCCCATTCCTTAGGATCTTTAA-----TGTGTCAATAAGGAGACTATACATTTC 4998122 Query 14174 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTG 14233 ||| |||||||||||||| || || || || ||||| || || | ||||| | || Sbjct 4998123 AGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTG 4998182 Query 14234 TACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAA 14293 ||||| | ||| | || ||| |||||||| ||| | |||||||| || ||||| Sbjct 4998183 GACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACTGTGCCATCACTTGCAGCAAA 4998242 Query 14294 AAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14351 || ||| || ||| | |||||||| ||| ||| || || || ||| | Sbjct 4998243 GAAGGCCAGAACATGGGAT--ATAAAGTAACTCTCCTCAGACTTAAGGGCTTCCCAGT-- 4998298 Query 14352 GATAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14409 | |||| || || |||||||| | || | | ||||| ||| |||||| | Sbjct 4998299 GCTAAATGTCTTTGGAAAGATCAATCTCCTTGGTGTTTCAAAAGGAAGCCTGAGCTTTCT 4998358 Query 14410 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTCGAAGATGTTT 14469 || |||| ||| || || | ||| | ||||||||| ||||| | || || || || Sbjct 4998359 TAGACATCTGCCAAATGTCATGGTATTCAACAGGAAAAACGACAAAGC-CGCAGGTG-TT 4998416 Query 14470 CTTTAAGAATTGGT 14483 || |||| | |||| Sbjct 4998417 CTCTAAGCAATGGT 4998430 >seq223 Length=5023716 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || ||||| || | || ||||||| ||||||||| | Sbjct 3965826 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 3965767 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || || |||||||| ||||| |||||||| ||||| | Sbjct 3965766 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGG 3965707 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 3965706 CTACAACACGTTCTCC 3965691 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| || ||||| || | || | || |||||||||||||| || ||| Sbjct 3966774 GACATCACTCCCATCTTCTGATACTCGCCTACGCGCTTCTCAAAGAAGTTAGTCTTCCCT 3966715 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||| |||||||||||||| |||||| Sbjct 3966714 TCCAGTGAAATATTCTCCATAAAATCAAACGGATTT 3966679 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 ||| || ||||||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 3962634 AATATAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 3962575 Query 14201 AAAACCATAAAAGCATCTAGCTTC 14224 || ||||| || || | |||||| Sbjct 3962574 GAAGCCATAGAAACAGCGAGCTTC 3962551 >seq11 Length=32252908 Score = 114 bits (126), Expect = 1e-20 Identities = 284/434 (65%), Gaps = 44/434 (10%) Strand=Plus/Plus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 || ||||| || | || || ||||| ||||| || | |||||| ||||||| |||||| Sbjct 31685056 AGGTGTTTGAACACTAGGCAAGCAAAGTCACAGTGTACACCCTCAACTCTACTCATAAGT 31685115 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || || |||||||| || ||| | | ||||| ||| || | ||| ||||||| || Sbjct 31685116 TCATTGGAAAATGTGGGGCCAGGCCTTAGTCCTCATTTCTTGAGCCAGAATATTGGCACA 31685175 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14033 || || | ||| |||| ||||| || ||||| || || |||| | |||| |||| Sbjct 31685176 AA-GAAGCAGAACAGAAGATTCCTTCCACTGCTGCCAAGGCTACAACACGTTTTCCA--- 31685231 Query 14034 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14093 || ||| || || || |||| | | | Sbjct 31685232 --------------------------TC-AGC------AGCTTCTTCTTTAC-ACAGGGC 31685257 Query 14094 ATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 14153 || ||||||| ||||| || | | ||||| || |||| | | |||||| || ||| Sbjct 31685258 ATCATTTCAATGGCATTGAAGAGAAATTCCCATTCCTTAGGATCTTTAATGTAAGTGTCA 31685317 Query 14154 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAG 14213 ||||| | |||||||||||||| ||||||||||||| || || || || ||| | || Sbjct 31685318 ATAAGGAGACTATACATTTCAGAATGTATGTTTTCCAAGGCAATTTGGAAGCCACAGAAA 31685377 Query 14214 CATCTAGCTTCCG---ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTA 14270 || |||||| | ||| ||||| | ||| | ||| | || ||||| || Sbjct 31685378 CAGTGAGCTTCTGTAATCCA---GACTTCTTGGCTAAACCGTTCTGTCAGGTTTTCGTTC 31685434 Query 14271 ACTATACCATCACT 14284 ||||| |||||||| Sbjct 31685435 ACTATGCCATCACT 31685448 >seq2236 Length=6892 Score = 93.3 bits (102), Expect = 4e-14 Identities = 213/316 (67%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 11308 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAG 11367 |||| ||| || |||||| | |||| |||||| | |||| |||||| || | Sbjct 2865 CATCCAAAACTTGAACTTCCTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTG 2806 Query 11368 CCACCCGATCG-CCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACT 11426 | | |||||| ||| ||||| | |||| | | ||| ||| ||||| | || ||| Sbjct 2805 CAATCCGATCAACCTTTTTTACTCC-AAATTTTTCTTTGCCAAAATTAAACAGTACAACA 2747 Query 11427 CCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATAT 11486 |||| || || || |||||||||||||| || || |||||| ||||||| || | | Sbjct 2746 CCAACATTTCCTCTGTAATCTTCATCTATCACACCAGCTCCTACATCTATGAAATGTTTT 2687 Query 11487 AACGAAAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTT 11546 | | ||||| | ||| |||| || | ||||||| | |||| | || Sbjct 2686 TCAGCCAAGCCAGAACGTGGAGCTACTCTTTCATAACACCCCTAAGGAAGGGCTATCTGA 2627 Query 11547 ATATCAGTTTTAACTAAAATTCTTTCT--TTTGATTTAACGATATAATCATAAGCACTAT 11604 || || ||||| || || |||||| | | | |||| |||||||||||||||| | Sbjct 2626 ATGTCTGTTTTCAC--AAGGGCTTTCTCCATGGGTGGAACGGTATAATCATAAGCACTGT 2569 Query 11605 ATAAATCATATCCTGC 11620 | || || || ||||| Sbjct 2568 ACAAGTCGTAGCCTGC 2553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479675421811200