Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq94 163 3e-35 seq223 123 2e-23 seq11 111 2e-19 seq2236 89.7 5e-13 >seq94 Length=13213440 Score = 163 bits (180), Expect = 3e-35 Identities = 409/613 (67%), Gaps = 19/613 (3%) Strand=Plus/Plus Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 ||||| ||||| || | ||| |||||||| ||| ||||||| | |||||||| | || Sbjct 4997831 GCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGTTCACTGGAAAATGTGAGGCCA 4997890 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782 |||| || | ||| ||| || | ||| ||||||| || || || | ||| |||| || Sbjct 4997891 GGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACTGGAGAAGA---TT 4997947 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATC 13842 || || ||||| ||||| |||| | | ||||| | | || |||||| | Sbjct 4997948 CCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTAGGTAATTTCTTTGTTCCCAGCC 4998007 Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAAT 13902 || ||||| || | | || || | | | ||||||||| || ||||||| Sbjct 4998008 CAACGCAAGGCCCAGTCTGCTGCCTTCTTTACACAGGGCATTGTTTCAATGGCATTGATG 4998067 Query 13903 AAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 13961 | | |||| || |||| | ||| || ||| |||||||| | ||||||||||| Sbjct 4998068 AGAAATTCCCATTCCTTAGGATCTTTAA-----TGTGTCAATAAGGAGACTATACATTTC 4998122 Query 13962 AGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14021 ||| ||||||||||| || || || || || ||||| ||||| | ||||||| || Sbjct 4998123 AGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTG 4998182 Query 14022 TACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAA 14081 || || | ||| | || ||| ||||||||| || | |||||||| || ||||| Sbjct 4998183 GACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACTGTGCCATCACTTGCAGCAAA 4998242 Query 14082 AAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCG 14139 || ||| || ||| | |||||||| ||| ||| || || || ||| | Sbjct 4998243 GAAGGCCAGAACATGGGAT--ATAAAGTAACTCTCCTCAGACTTAAGGGCTTCCCAGT-- 4998298 Query 14140 GCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14197 |||||| || || |||||||| | || | | ||||| ||| |||||| | Sbjct 4998299 GCTAAATGTCTTTGGAAAGATCAATCTCCTTGGTGTTTCAAAAGGAAGCCTGAGCTTTCT 4998358 Query 14198 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATGTTT 14257 || |||| ||| || || | ||| | ||||||||| ||||| | | || || || Sbjct 4998359 TAGACATCTGCCAAATGTCATGGTATTCAACAGGAAAAACGACAAAGC-CGCAGGTG-TT 4998416 Query 14258 CTTTAAGAATTGG 14270 || |||| | ||| Sbjct 4998417 CTCTAAGCAATGG 4998429 >seq223 Length=5023716 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || ||||| || | || ||||||| ||||||||| | Sbjct 3965826 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 3965767 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || || |||||||| ||||| |||||||| ||||| | Sbjct 3965766 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGG 3965707 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 3965706 CTACAACACGTTCTCC 3965691 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 ||| || ||||||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 3962634 AATATAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 3962575 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | |||||||| Sbjct 3962574 GAAGCCATAGAAACAGCGAGCTTCTG 3962549 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| || ||||| || | || | || ||||| |||||||| || ||| Sbjct 3966774 GACATCACTCCCATCTTCTGATACTCGCCTACGCGCTTCTCAAAGAAGTTAGTCTTCCCT 3966715 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| ||||||||||| || |||||| Sbjct 3966714 TCCAGTGAAATATTCTCCATAAAATCAAACGGATTT 3966679 >seq11 Length=32252908 Score = 111 bits (122), Expect = 2e-19 Identities = 283/434 (65%), Gaps = 44/434 (10%) Strand=Plus/Plus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || ||||| || | || || ||||| ||||| || | |||||| ||||||| |||||| Sbjct 31685056 AGGTGTTTGAACACTAGGCAAGCAAAGTCACAGTGTACACCCTCAACTCTACTCATAAGT 31685115 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || || |||||||| || ||| | | ||||| ||| || | ||| ||||||| | Sbjct 31685116 TCATTGGAAAATGTGGGGCCAGGCCTTAGTCCTCATTTCTTGAGCCAGAATATTGGCACA 31685175 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || | ||| |||| ||||| || ||||| || || |||| | |||| |||| Sbjct 31685176 AA-GAAGCAGAACAGAAGATTCCTTCCACTGCTGCCAAGGCTACAACACGTTTTCCA--- 31685231 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 13881 || ||| || || || |||| | | | Sbjct 31685232 --------------------------TC-AGC------AGCTTCTTCTTTAC-ACAGGGC 31685257 Query 13882 ATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 13941 || |||| || |||||||| | | |||| || |||| | | |||||| || ||| Sbjct 31685258 ATCATTTCAATGGCATTGAAGAGAAATTCCCATTCCTTAGGATCTTTAATGTAAGTGTCA 31685317 Query 13942 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 ||||| | |||||||||||||| ||||||||||| | || || || || ||| | ||| Sbjct 31685318 ATAAGGAGACTATACATTTCAGAATGTATGTTTTCCAAGGCAATTTGGAAGCCACAGAAA 31685377 Query 14002 CATCTAGCTTCTG---ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTA 14058 || |||||||| ||| || || | ||| | ||||| || |||||| || Sbjct 31685378 CAGTGAGCTTCTGTAATCCA---GACTTCTTGGCTAAACCGTTCTGTCAGGTTTTCGTTC 31685434 Query 14059 ACAATACCATCACT 14072 || || |||||||| Sbjct 31685435 ACTATGCCATCACT 31685448 >seq2236 Length=6892 Score = 89.7 bits (98), Expect = 5e-13 Identities = 212/316 (67%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 11122 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGTG 11181 |||| ||| || |||||| | |||| |||||| | |||| |||||| |||| Sbjct 2865 CATCCAAAACTTGAACTTCCTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTG 2806 Query 11182 CCACTCGATCG-CCTCTTTTAATATTAAATGTATTTTTACTATTATTAATAAATATAACT 11240 | | ||||| ||| ||||| | |||| | | ||| | | ||||| | || ||| Sbjct 2805 CAATCCGATCAACCTTTTTTACTCC-AAATTTTTCTTTGCCAAAATTAAACAGTACAACA 2747 Query 11241 CCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATAT 11300 |||| || || || |||||||||||||| || || |||||| ||||||| || | | Sbjct 2746 CCAACATTTCCTCTGTAATCTTCATCTATCACACCAGCTCCTACATCTATGAAATGTTTT 2687 Query 11301 AACGAAAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTT 11360 | | ||||| | ||| |||| || | ||||||| | |||| | || Sbjct 2686 TCAGCCAAGCCAGAACGTGGAGCTACTCTTTCATAACACCCCTAAGGAAGGGCTATCTGA 2627 Query 11361 ATATCAGTTTTAACTAAAATTCTTTCT--TTTGATTTAACGATATAATCATAAGCACTAT 11418 || || ||||| || || |||||| | | | |||| |||||||||||||||| | Sbjct 2626 ATGTCTGTTTTCAC--AAGGGCTTTCTCCATGGGTGGAACGGTATAATCATAAGCACTGT 2569 Query 11419 ATAAATCATATCCTGC 11434 | || || || ||||| Sbjct 2568 ACAAGTCGTAGCCTGC 2553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478536346667520