Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq94 212 8e-50 seq11 176 6e-39 seq223 138 2e-27 seq51 138 2e-27 seq202 120 4e-22 seq44 114 2e-20 >seq94 Length=13213440 Score = 212 bits (234), Expect = 8e-50 Identities = 416/607 (69%), Gaps = 26/607 (4%) Strand=Plus/Plus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 ||||| |||| || || || || ||||| | || |||||||| ||| | | ||| Sbjct 4997813 TGTTTGAACAGCAGGTGAGCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGTTCA 4997872 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 ||||||| ||||| || |||| || | | || || ||||| ||||| || ||||| Sbjct 4997873 CTGGAAAATGTGAGGCCAGGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCAAAA 4997932 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 42229 || | || |||||||||||| ||||| |||||||| | | |||||||| || | Sbjct 4997933 GAACTGGA---GAAGATTCCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTA---G 4997986 Query 42230 GCACTGTCAT-GTATCCA---CTTTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGC 42283 | | | || | || ||| | | ||||| || || ||| |||||||| ||| Sbjct 4997987 GTAATTTCTTTGTTCCCAGCCCAACGCAAGGCCCAGTCTGCTGCCTTCTTTACACAGGGC 4998046 Query 42284 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCG 42343 || ||||| |||||||| | |||| | | ||| ||| |||||||| ||| || Sbjct 4998047 ATTGTTTCAATGGCATTGATGAGAAATTCCCATTCCTTAGGATCTTTAA----TGTGTCA 4998102 Query 42344 ATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 42403 || | |||||||||||||| ||||| |||||||| ||||| || || || || |||||| Sbjct 4998103 ATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 4998162 Query 42404 CATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACT 42463 || | ||| || |||| ||| |||||| | ||| || || | | ||||| |||||| Sbjct 4998163 CAGCGGGCTTCTGTAATCTGGACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACT 4998222 Query 42464 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGT 42523 | || ||||| || ||||| || |||| ||||| |||||| || | || | | | Sbjct 4998223 GTGCCATCACTTGCAGCAAAGAAGGCCAGAACATGGGATATAAAGTAACTCTCCT-CAGA 4998281 Query 42524 GTTAATTTATT-CCAATCATTGATATCTTT----AGATATATCTACTTCTTCTACCGTCC 42578 |||| || ||| | | || ||||| |||| |||| ||| | | | | Sbjct 4998282 CTTAAGGGCTTCCCAGTGCTAAATGTCTTTGGAAAGATCAATCTCCTTGGTGT----TTC 4998337 Query 42579 AAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAA 42638 |||| || || | || || ||| |||| | ||| || ||||| |||| || || |||| Sbjct 4998338 AAAAGGAAGCCTGAGCTTTCTTAGACATCTGCCAAATGTCATGGTATTCAACAGGAAAAA 4998397 Query 42639 TAACAAA 42645 ||||| Sbjct 4998398 CGACAAA 4998404 >seq11 Length=32252908 Score = 176 bits (194), Expect = 6e-39 Identities = 289/425 (68%), Gaps = 35/425 (8%) Strand=Plus/Plus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 ||||| |||| | || || || || ||||| | ||||||| ||||||| || | ||| Sbjct 31685059 TGTTTGAACACTAGGCAAGCAAAGTCACAGTGTACACCCTCAACTCTACTCATAAGTTCA 31685118 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 |||||||| ||| | || ||| |||| || | || || ||||| ||||| | | |||| Sbjct 31685119 TTGGAAAATGTGGGGCCAGGCCTTAGTCCTCATTTCTTGAGCCAGAATATTGGCACAAA- 31685177 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 42229 || ||||| ||||||||||||| ||||| || ||||| | || | | ||||| | | Sbjct 31685178 GAAGCAGAACAGAAGATTCCTTCCACTGCTGCCAAGGCTACAACACGTTTTCCATCAGCA 31685237 Query 42230 GCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 42289 || ||||| |||||||| |||||| || Sbjct 31685238 GC----------------------------------TTCTTCTTTACACAGGGCATCATT 31685263 Query 42290 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAA 42349 || |||||||| |||||| | | ||| ||| |||||||| || || || || | Sbjct 31685264 TCAATGGCATTGAAGAGAAATTCCCATTCCTTAGGATCTTTAATGTAAGTGTCAATAAGG 31685323 Query 42350 AGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409 |||||||||||||| ||||| |||||||| | ||| || || || || ||||||| Sbjct 31685324 AGACTATACATTTCAGAATGTATGTTTTCCAAGGCAATTTGGAAGCCACAGAAACAGTGA 31685383 Query 42410 GCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469 || || |||| | |||||| | ||| ||||| | | |||||||||||||| || Sbjct 31685384 GCTTCTGTAATCCAGACTTCTTGGCTAAACCGTTCTGTCAGGTTTTCGTTCACTATGCCA 31685443 Query 42470 TCACT 42474 ||||| Sbjct 31685444 TCACT 31685448 >seq223 Length=5023716 Score = 138 bits (152), Expect = 2e-27 Identities = 103/121 (85%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 3965826 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 3965767 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| |||||||| || |||||||||||||||||||| ||||| ||||||| Sbjct 3965766 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGG 3965707 Query 42207 C 42207 | Sbjct 3965706 C 3965706 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| ||| ||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 3962640 ATCTTTAATATAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3962581 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || || |||||||| | || || |||||||| |||||| Sbjct 3962580 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAACCTGGACTTCT 3962535 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/148 (75%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 41709 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAA 41765 || |||| |||| ||||| |||| || | ||| ||| ||| | || ||||| | Sbjct 3966827 TTCTGTTCATTTAGAAGTCCGCATCCAAGGTGAAAGAATTCTCTGTTGGACTCGACATCA 3966768 Query 41766 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATG 41825 ||||||| || || || || || || || || || || || |||||||| ||||||| || Sbjct 3966767 CTCCCATCTTCTGATACTCGCCTACGCGCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTG 3966708 Query 41826 ATATATTTTCCATGAAATCAAACGGATT 41853 | ||||| ||||| |||||||||||||| Sbjct 3966707 AAATATTCTCCATAAAATCAAACGGATT 3966680 >seq51 Length=18525102 Score = 138 bits (152), Expect = 2e-27 Identities = 235/342 (69%), Gaps = 23/342 (7%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || |||||||| | |||||||||||| || | | ||| ||||||| ||||| Sbjct 17120055 CAAGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTGACAAGTTCAGTGGAAAATGTGAGG 17120114 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||||| | || || ||||| ||| | ||||| || || | || ||| Sbjct 17120115 CCAGGCATTAATCTTTATTTCTTGAGCCAGGGTATCAATGCAAAGGAAGCAAAGAATAAG 17120174 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCACTGTCATGTAT 42243 |||||||| ||| | ||||| || | || |||||||| ||| || || || | Sbjct 17120175 ATTCCTTCCACTACTGCAAATGCTACAACACTCTCTCCTTAATCCAACA----CAAG--- 17120227 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 | ||| || |||||||| || ||| | |||| | |||| |||||||| || Sbjct 17120228 ----------GACCAGTCTGCCTTCTTCTTCACAAAGGGCACCATTTCAATGGCATTGAA 17120277 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 || | | | ||| ||| |||||||| ||||| || | ||||||| ||||| Sbjct 17120278 GACAAATTCCCATTCCTTAGGATCTTTAA-----GTATCAATAATGAGACTATCTATTTC 17120332 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 42405 ||| | |||||||| |||||||| || || | |||||||| Sbjct 17120333 AGAACGGATGTTTTCCATGGCCATTTGGAAGTCATAGAAACA 17120374 >seq202 Length=5697000 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| |||||||| |||||||| ||||| ||||| | ||| || Sbjct 3890747 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGGCCTCTCTTCTTC 3890688 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| || || | ||||| |||||||| ||||| ||||||||||| ||||||||||| Sbjct 3890687 AGCCAGAAAATCGCAGCAAAAGATCCAGAGAAGAAAATTCCTTCTACAGCCGCAAAGGC 3890629 >seq44 Length=20396770 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| ||||||||||| || |||||| |||| |||| || || ||||| || | Sbjct 12594163 TCCAGCCGTAGAAATGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 12594222 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 12594223 TCAGAGACTGGCTTTGATCTATGAAAGCCCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 12594282 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 |||| | ||||||||| | || ||||||| |||| | || || |||| Sbjct 12594283 TTTGAGAAATTTCCCACACCGTCTTATAAAGCTGCTTCAAGTCATCGGGAA 12594333 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| |||||||| || ||||| |||| |||||||| || || |||||||| | ||| | Sbjct 12601427 TACCTGAAATTCCCCTGACAAGACTCGGCGAGTGTAGATGTTGCTGGTATAAGCTTCAAT 12601486 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 ||||||||||| || | || ||||||||||| ||||| ||||| || || | | || Sbjct 12601487 AGACTCATTATTCCCAAGTATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 12601546 Query 71262 ACTATTTCTAAGACCAT 71278 ||| ||||| | ||||| Sbjct 12601547 ACTGTTTCTTACACCAT 12601563 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| ||||| || ||||||||||| || | ||||||||| |||| | || Sbjct 12616089 ACTCGTTTCATGAAGAGGTCTGGAATCCAAAGGGCAAAAAATAGATCCCTGGCACGCTGT 12616148 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || ||||| || ||||| || | ||| |||||| | | || || ||||||| || Sbjct 12616149 TCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCATGGC 12616208 Query 72142 TCCAAGTATATGGC 72155 |||||||| || || Sbjct 12616209 TCCAAGTAAATAGC 12616222 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 72412 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 72471 ||| | || || ||||| || | |||||||||||| || |||||||| || |||||||| Sbjct 12623874 CGATTGGTCCCAGCATTGAAGAGGGTAGGAGAAGCATGAGTAAACCACTTCTCAGACAGA 12623933 Query 72472 AGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGC 72531 || ||||| || |||||||| | || ||||| || || || || || | || | | Sbjct 12623934 AGGTTGTATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCGACAGATACCCTC 12623993 Query 72532 ATTAACATATGCTGAGGTCTTTCA 72555 || | ||||||||| ||||||||| Sbjct 12623994 ATCAGCATATGCTGTGGTCTTTCA 12624017 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || ||| |||| || ||||| || || | | || ||||||||||| || || || Sbjct 12613386 GAGCCTTCATAGGTTTCGTAAGGGCCAAGCTCCTTAGCCAGTTCACAACTGGCTTCCAAA 12613445 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 |||||||||||||||||||| || || | ||||| || || || || || || ||| Sbjct 12613446 GCTCCATAATAAATGGTTTCAAATATTTGTTTATTCAGTAACTGGGCCTCTGGACTCTCA 12613505 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||||| | | || || || || ||||||| ||||| || ||||| || || || Sbjct 12613506 AAAGGATATCTCATCAGGATGAAAGCATCTGCTAGACCTTGGACCCCAATTCCAATGGGA 12613565 Query 71554 CTGTGTCTCTTATTAGA 71570 | || | ||||| || Sbjct 12613566 CGATGGCGTTTATTTGA 12613582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671065643143680