Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq33 87.8 2e-12 seq257 82.4 8e-11 seq71 82.4 8e-11 >seq33 Length=21904142 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| || || || || || |||||||| || || || | | || Sbjct 10626746 CAATACAAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTCCGCCCATC 10626805 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| || ||||| |||||| |||| || | |||||||| ||||| || ||||| ||||| Sbjct 10626806 TTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTC 10626865 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 || || || | | || | ||||||| |||||| || || | || | || Sbjct 10626866 CTGGATCTTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 10626925 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || || | ||||||||||| || ||||| Sbjct 10626926 CTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 10626958 >seq257 Length=4087618 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || || || |||||||| || || || | | ||||| || ||| Sbjct 3395611 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTCCGCCCATCTTCCAGCTGT 3395552 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || |||||| |||| || | |||||||| ||||| || ||||| ||||| || || Sbjct 3395551 TTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTG 3395492 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | ||||||| |||||| || || | || | ||||| || || Sbjct 3395491 GCCTTGACATTCTCGATTGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTG 3395432 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||||||||| || ||||| Sbjct 3395431 AGGGTTTTTACGAAAATCTGCAT 3395409 >seq71 Length=16036057 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || || || |||||||| || || || | | ||||| || ||| Sbjct 9284297 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTCCGCCCATCTTCCAGCTGT 9284356 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || |||||| |||| || | |||||||| ||||| || ||||| ||||| || || Sbjct 9284357 TTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTG 9284416 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | ||||||| |||||| || || | || | ||||| || || Sbjct 9284417 GCCTTCACATTCTCGATTGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTG 9284476 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||||||||| || ||||| Sbjct 9284477 AGGGTTTTTACGAAAATCTGCAT 9284499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506958831221760