Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq64 96.9 3e-15 seq324 87.8 1e-12 seq281 84.2 2e-11 seq126 82.4 6e-11 >seq64 Length=16039902 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 ||||| | ||| ||||| ||||| ||||||||||| || || ||| |||| ||||| Sbjct 15621940 ATCAATCTTTGCTGGTCAGGAGGAATGCCTTCTTTGTCTCAGATCTTGGTCTTCACAATC 15621881 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTT 15348 || ||||| || ||| ||| || || | ||||||||| |||||||||||||| || Sbjct 15621880 TCAATGGTGTCACTAGGTTCAACCTCAAGGGTAATGGTCTTACCTGTCAGAGTCTT 15621825 >seq324 Length=2564792 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | ||| | || ||||| || ||||| || |||||||| || Sbjct 465136 CCACCTCTCAGACGAAGAACGAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAA 465195 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | || ||||| || | || | | || |||||| ||| Sbjct 465196 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGTGGG 465255 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || || ||| ||| ||| | || ||||||||||| || || Sbjct 465256 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACC 465315 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || | || ||||| || || || || || |||||||| |||||||| ||||| Sbjct 465316 TCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATTTGCAT-TTTGA 465367 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | ||| | || ||||| || ||||| || |||||||| || Sbjct 464908 CCACCTCTCAGACGAAGAACGAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAA 464967 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | || ||||| || | || | | || |||||| ||| Sbjct 464968 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGTGGG 465027 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || || ||| ||| ||| | || ||||||||||| || || Sbjct 465028 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACC 465087 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| ||||| || || || || ||||| || || || |||||| Sbjct 465088 TCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATCTGCATA 465135 >seq281 Length=3341665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/227 (70%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 15143 CTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAAT- 15201 ||||| || | || || || || ||||| ||||| || ||||||||||| || || Sbjct 1930796 CTCAAGCTCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGACAGGATG 1930855 Query 15202 TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGT----TTGGAA 15257 | || | |||||| | |||| ||||| | ||||| | || |||| | | || | Sbjct 1930856 TGTC-CATCTTCTGCT-GTTTCCCAGCAAAGATCAATCTCTGCTGGTTGCGGGATAGGGA 1930913 Query 15258 TTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||||| ||| ||||| ||| ||| | || ||||| ||||| || || Sbjct 1930914 TTCCTTCTTTGTCTTGAATCTTTGC-CTTGACATTCTCAATGGTGTCGCTTGGCTCAACC 1930972 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || |||| || || ||||| || ||||| Sbjct 1930973 TCAAGGGAGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1931019 >seq126 Length=9672431 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAAT 15217 ||| |||||||| ||||| || |||||||| || | ||| | || | || |||| Sbjct 5918417 ATGCAGGGTGGACTCTTTCTGGATGTTGTAGTC--TGAGAGTGTACGGCCATCCTCTAGC 5918360 Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277 ||||||||||| |||||| ||| || ||||| | || || || ||||| ||| Sbjct 5918359 TGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGAAGGATGCCCTCCTTGTCTTGGATT 5918300 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 ||| || ||| | || |||||||| || || || || | || ||||| | | Sbjct 5918299 TTGGCTTTGACATTCTCGATGGTATCACTGGGCTCGACCTCAAGAGTGATGGTCCTGGCA 5918240 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 ||||| || || ||||| || ||||| |||| Sbjct 5918239 GTCAGGGTCTTCACAAAGATCTGCATCTTTG 5918209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362140497530688