Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq94 156 4e-33 seq11 113 4e-20 seq223 111 1e-19 seq202 93.3 4e-14 >seq94 Length=13213440 Score = 156 bits (172), Expect = 4e-33 Identities = 292/428 (68%), Gaps = 7/428 (2%) Strand=Plus/Plus Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 ||||| |||||||| || ||||||||||| || | || || | |||||||| || || Sbjct 4997831 GCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGTTCACTGGAAAATGTGAGGCCA 4997890 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 |||| || ||| ||| || | ||| ||||| | ||||| |||| || || | || Sbjct 4997891 GGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACTGGAGAAGA---TT 4997947 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 ||||| ||||||||||| |||| | || || || || ||| | | ||| || | | Sbjct 4997948 CCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTAGGTAATTTCTTTGTTCCCAGCC 4998007 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 || |||||||| |||| | || || ||| ||| |||| || || || | Sbjct 4998008 CAACGCAAGGCCCAGTCTGCTGCCTTCTTTACACAGGGCATTGTTTCAATGGCATTGATG 4998067 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 | | | | ||||||| ||| ||| || || || | | ||||||||||| Sbjct 4998068 AGAAATTCCCATTCCTTAGGATCTTTAAT----GTGTCAATAAGGAGACTATACATTTCA 4998123 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGA 13513 ||||| || |||||||| || |||||||| ||||| ||||| | || |||| | ||| Sbjct 4998124 GAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGG 4998183 Query 13514 ACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaa 13573 ||||| | ||| | || | | |||||| || ||| | || ||||| |||||||| Sbjct 4998184 ACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACTGTGCCATCACTTGCAGCAAAG 4998243 Query 13574 aaaGCAAG 13581 || || || Sbjct 4998244 AAGGCCAG 4998251 >seq11 Length=32252908 Score = 113 bits (124), Expect = 4e-20 Identities = 284/431 (66%), Gaps = 38/431 (9%) Strand=Plus/Plus Query 13133 AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192 || || || |||| | || ||||| |||||||| | || ||| ||||||| || || Sbjct 31685056 AGGTGTTTGAACACTAGGCAAGCAAAGTCACAGTGTACACCCTCAACTCTACTCATAAGT 31685115 Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 || || |||||||| | || ||| | || |||| ||| || | ||| ||||| | || Sbjct 31685116 TCATTGGAAAATGTGGGGCCAGGCCTTAGTCCTCATTTCTTGAGCCAGAATATTGGCACA 31685175 Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATAC 13312 || ||| | ||| | || |||||||| |||||||| || |||| |||| || Sbjct 31685176 AA-GAAGCAGAACAGAAGATTCCTTCCACTGCTGCCAAGGCTA-CAAC----------AC 31685223 Query 13313 GTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC 13372 || | |||| || | ||| ||| || |||| | ||| | Sbjct 31685224 GT---------------TTTCCA---TCAG---CAG----CTTCTTCTTTA-CACAGGGC 31685257 Query 13373 ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCT 13432 || |||| || || || || | | | | ||||||| ||| ||| ||||| || Sbjct 31685258 ATCATTTCAATGGCATTGAAGAGAAATTCCCATTCCTTAGGATCTTTAATGTAAGTGTCA 31685317 Query 13433 ATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAA 13492 || | | ||||||||||| ||||| || ||||||| || |||||||| ||| | ||| Sbjct 31685318 ATAAGGAGACTATACATTTCAGAATGTATGTTTTCCAAGGCAATTTGGAAGCCACAGAAA 31685377 Query 13493 CATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACT 13552 || ||| |||| | | ||||| | ||| | ||||| | ||||||||| ||| Sbjct 31685378 CAGTGAGCTTCTGTAATCCAGACTTCTTGGCTAAACCGTTCTGTCAGGTTTTCGTTCACT 31685437 Query 13553 ATCCCGTCACT 13563 || || ||||| Sbjct 31685438 ATGCCATCACT 31685448 >seq223 Length=5023716 Score = 111 bits (122), Expect = 1e-19 Identities = 101/126 (80%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || ||||| || || || ||||| || |||||||| || Sbjct 3965824 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3965765 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| ||||| | ||||| ||||| ||||| || |||||||||||||||||||| ||| Sbjct 3965764 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCT 3965705 Query 13295 ATCAAC 13300 | |||| Sbjct 3965704 A-CAAC 3965700 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||||||||| || | | ||||||||||| ||||| || |||||||| || ||||| Sbjct 3962634 AATATAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 3962575 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | ||| |||| ||||| ||||| Sbjct 3962574 GAAGCCATAGAAACAGCGAGCTTCTGTAACCTGGACTTC 3962536 >seq202 Length=5697000 Score = 93.3 bits (102), Expect = 4e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATT 12859 |||||||||| ||| | | || |||| ||| || || | ||||||||| | | Sbjct 3906111 TTTAAAAATCGGCATCCAAGGTGAAGACATTATCTGTGGTT-TCTGACATAACTGCAAAA 3906053 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || ||||| |||||||||||| |||||||| |||||||| ||||| ||| Sbjct 3906052 CGCTGATACTCCGAAACTCGTTTTTCAAAAAAATTTGTTTTCCCTTCTAATGAAATGTTT 3905993 Query 12920 TCCATAAAATCGAAAGGATT 12939 ||||||||||| || ||||| Sbjct 3905992 TCCATAAAATCAAAGGGATT 3905973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430936345220736