Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq63 104 2e-17 >seq63 Length=16905340 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| | |||||| |||| ||||||| Sbjct 6590256 GGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCAAATTTTACCTGGAGATGGTGATG 6590197 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 |||||||| || ||| | || || |||||||| ||||| || ||||| |||| || ||| Sbjct 6590196 CCGCAGGCAGAGAATGAGGGCCCAGACATCAAGGAGCATGTGAACTCCTTGGGGGATAAG 6590137 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || | || || || | ||||| ||||| Sbjct 6590136 CTGAAGGCCCTCCGGCTGAGGCTGCGGCGCTG 6590105 Score = 82.4 bits (90), Expect = 7e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 ||| || |||||||||||||| ||||| ||||| |||||||||||||||||| | ||||| Sbjct 6587979 AGGTGTCTACAAGGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAAGCCTACAT 6587920 Query 129164 GAC 129166 ||| Sbjct 6587919 GAC 6587917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447701326556160