Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq316 102 6e-17 >seq316 Length=2809289 Score = 102 bits (112), Expect = 6e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 25772 TCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGT 25831 |||| ||| | || |||||||| |||| ||||||||| || ||||| || || || || | Sbjct 1689903 TCATATCCTTATATTCTGCTCCAAAATGCCTCCACTGAAAGCCGTAGACAGGGCCCAGAT 1689962 Query 25832 CTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 |||| || || | | ||| ||| | ||||||||||| | ||| |||||||| | Sbjct 1689963 CTCCTTCATCTCGGGTGGAAAATCCCAGGCTGTCCAAAAAGTCACGGGATCCATTGGCAT 1690022 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||||||||| || || || ||||| || | || ||||| || Sbjct 1690023 CCCAGATCTTTACGCCTTTGGAAGACAGCTCCTTAGCATTGGTGGAGCC 1690071 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/163 (73%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 25490 TAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGG 25549 ||| || || | || || |||||||| ||||| || ||||||||| ||||| || || Sbjct 1685910 TAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGG 1685969 Query 25550 TACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGC 25609 ||||| | |||||||| || ||||||||||| |||||||| ||||| || | | Sbjct 1685970 CACCCCCAGGCCCATGTCTCCT-GACCTCTGGTACAGCTGACAGGAGAGTTCACCATTCA 1686028 Query 25610 TCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 |||||| ||||| || | || | ||| || || || || || Sbjct 1686029 CCACGTAGAACTGGCAAAGGGCATGGCAGGGTGGCAGGGCCAT 1686071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340101252896064