Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq39 86.0 3e-12 seq391 84.2 1e-11 seq538 82.4 4e-11 seq246 82.4 4e-11 seq2 82.4 4e-11 >seq39 Length=21554728 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| ||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 9922369 TGGCACATACAGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 9922428 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 9922429 TGAGCTAACCGGCC 9922442 >seq391 Length=1626971 Score = 84.2 bits (92), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 1414773 AAAAAAAAAGCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 1414832 Query 11505 CTCTRACCAACTGAGCTAATGGGCC-GTCG 11533 |||| |||||||||||||| |||| |||| Sbjct 1414833 CTCTAACCAACTGAGCTAACCGGCCAGTCG 1414862 >seq538 Length=411127 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 168678 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 168737 Query 11528 CC 11529 || Sbjct 168738 CC 168739 >seq246 Length=4228409 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 3361929 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3361870 Query 11528 CC 11529 || Sbjct 3361869 CC 3361868 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 3434479 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3434538 Query 11528 CC 11529 || Sbjct 3434539 CC 3434540 >seq2 Length=47609318 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 36292461 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 36292402 Query 11528 CC 11529 || Sbjct 36292401 CC 36292400 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261463257050368