Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq63 102 9e-17 >seq63 Length=16905340 Score = 102 bits (112), Expect = 9e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || |||||| | |||||||||||| || | Sbjct 6590258 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCAAATTTTACCTGGAGATGGTGA 6590199 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| ||||| || ||| ||| ||| || ||| ||||| |||||||| |||| || | Sbjct 6590198 TGCCGCAGGCAGAGAATGAGGGCCCAGACATCAAGGAGCATGTGAACTCCTTGGGGGATA 6590139 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || ||| |||| |||| Sbjct 6590138 AGCTGAAGGCCCTCCGGCT 6590120 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || | ||||| |||||||| ||||||||||| |||||||| || || ||||| | Sbjct 6587992 AGCTCCAAAAGAAAGGTGTCTACAAGGCCATGAGTGAGTTTGACATCTTCATCAACTACA 6587933 Query 10419 TAGAAGCATACATGACCATGAA 10440 ||||||| |||||||| ||||| Sbjct 6587932 TAGAAGCCTACATGACAATGAA 6587911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547319207239680