Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq40 203 5e-47 seq184 187 4e-42 seq272 122 1e-22 seq92 104 3e-17 seq433 91.5 2e-13 >seq40 Length=21071559 Score = 203 bits (224), Expect = 5e-47 Identities = 420/621 (68%), Gaps = 8/621 (1%) Strand=Plus/Minus Query 9330 GCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATG--CCGTGGGTCATGAGT 9387 |||||| || || || ||||| | ||| || | ||||| | || || || ||| Sbjct 16839816 GCCAGCAATCTGCTTGGTGAATGCTTCAACAAAGTGGGTCACTATCCATGCTCCAGCAGT 16839757 Query 9388 ATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCAAACGCA 9447 | || |||||||| || || | |||||| |||| | |||| ||||| ||| | Sbjct 16839756 ACAGAGTTGTTGTAGACAAACTGTTGGTAGTCGTACTCTTGGTTATTAATCTGAAAGGTG 16839697 Query 9448 TCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGG 9507 || |||| ||||| |||||||| || | ||||||||||| | || | |||||| Sbjct 16839696 TCAGGCAGGAGAGGGTGCCAGTGGTAGAGAGAGTTAAACTCGGCAGCAATGCAGTTTTGG 16839637 Query 9508 TACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTGGTAGCCG 9567 | |||||| | || ||||| || || | |||| || | ||| || ||||| Sbjct 16839636 TCCTGGAAATCTTGATTGAAAAGCAGCTCTGGGTCAAACTTCAGTTTAAAATGATAGCCA 16839577 Query 9568 CTGAGCTGCTGAACATA--CTGCG-TCACGATAATGTTGATTGTTTCCCCGATAATGATG 9624 ||||| ||||| ||||| || || |||| ||| || || | || || || | || Sbjct 16839576 CTGAGGTGCTGCACATAGTCTTCGATCAC---AATATTAATAATCTCTCCTATGAGAATT 16839520 Query 9625 AGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACA 9684 || | | ||||| ||||| || || ||| | || | || || || ||| || ||| Sbjct 16839519 AGCCTGCTTGTCTGGAACAGCTGCTCATCATCCTATCCGGGGTGCTCCTCTTTAAGCACA 16839460 Query 9685 TCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACC 9744 || ||||||| ||| ||||| || ||||| | || || |||||||| ||||| |||||| Sbjct 16839459 TCACACACTCGGTTATGTTCGCTAAGCCAATTGGTGGCATACATCATTAGACCCGGCACC 16839400 Query 9745 AGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAG 9804 || ||||| ||| ||| || || || | || | | || || || | ||||| || Sbjct 16839399 AGACCAAAGACCTGTTGCCCCACCGCAAAGCGAACGTGCTCTGGTACGTTTGGAGGGTAC 16839340 Query 9805 ATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTGA 9864 ||||||| ||||| || ||||| | ||| |||||||| || || |||| |||||| Sbjct 16839339 ATCATGTCTACCTGAGTCTCCTTGACTGTGGGAGGATACATCTCTCCATCAACCATCTGA 16839280 Query 9865 TACTTATCTTTCGCGTCTCTGAAGAGACGCAACTTTGACTGTTTTTCTGGCGTCTCTCCA 9924 || || ||| | || |||| || ||| || |||| | || | || || ||| Sbjct 16839279 TATTTCAGTTTTCCATCCTTGAAAAGGTGCAGTTTATGCTGTCTGTCCAGAGTTTCACCA 16839220 Query 9925 TAGATGTGGTTGAGATCCACC 9945 || || || | | ||||||| Sbjct 16839219 TAAATATGACTTAAATCCACC 16839199 Score = 132 bits (146), Expect = 7e-26 Identities = 201/285 (71%), Gaps = 1/285 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 || || ||||| || || | |||| |||||||| || | || | |||||||| | Sbjct 16840248 GGGCAGCCTTTCACATTATTGCAGATGAGAGACTGAATCGAGGCTGTGTTGACGATTTTA 16840189 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| ||||| || || ||||| || ||||| || || || || || || Sbjct 16840188 AAACCCACTTCTCCACCAAACGTGCTAGGCTTCCAATAGGTAGGAGAACATATAGTATTA 16840129 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCC-AGCTCGAGAATGCTCTCACCGAAGAT 8871 |||| || ||||| | |||||| || || || || || | ||| ||||||| ||||| Sbjct 16840128 CCCATCAGTCCTTTCAAGGAAAATGGTGCGGCCTAGTTCTACCATGGTCTCACCAAAGAT 16840069 Query 8872 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTC 8931 || | ||||| |||||||| |||| | |||| |||| ||||| ||| || ||||| Sbjct 16840068 GGAATCTGGACGAGGCTTTTCTACCAGCAGGCCGGGATACAGCTCCATAGCTTCAATGTC 16840009 Query 8932 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || || || || | || ||||| |||||||||||||| || Sbjct 16840008 ACCATAGAGAGCTTCTAACTCTGCAGCCATTTCCTTTTCTCCAGT 16839964 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 10032 ACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAAAAC 10091 |||||||| ||||||||||| || || || || |||| | ||||| ||| | ||| || Sbjct 16839201 ACCCCATGGCCCAGTCCTTTGGTAAAAGCTGGCCCTCACTTAAAATCTGTCTTGAAATAC 16839142 Query 10092 TGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCGGGA 10151 || || || || |||||| |||| || | |||||| | || |||||||| ||||| | Sbjct 16839141 TGATGAGTAAAGTGTTGGGCAAAGAACGTAAACATCATATTTGTGCCCTGAGGATCAAGG 16839082 Query 10152 GTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 |||| | || | | |||| |||||||||||| Sbjct 16839081 ATGAACTTTCTTCTCAAAAGAACTTTTTCCACAAC 16839047 >seq184 Length=6332433 Score = 187 bits (206), Expect = 4e-42 Identities = 409/615 (67%), Gaps = 17/615 (3%) Strand=Plus/Plus Query 9331 CCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTCATGAGTATG 9390 ||||| || || || ||||| | ||| || | ||||| | || || || |||| Sbjct 2433436 CCAGCAATCTGCTTGGTGAATGCTTCAACAAAGTGGGTCACTCCATGCTCCAGCAGTACA 2433495 Query 9391 GAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCAAACGCATCC 9450 || |||||||| || || | ||||| |||| | |||| ||||| ||| | || Sbjct 2433496 GAGTTGTTGTAGACAAACTGTTGGTAGTTGTACTCTTGGTTATTAATCTGAAAGGTGTCA 2433555 Query 9451 GGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGGTAC 9510 |||| ||||| |||||||| || | |||||||||||| | || | ||||||||| Sbjct 2433556 GGCAGGAGAGGGTGCCAGTGGTAGAGAGTGTTAAACTCGGCAGTGATGCAGTTTTGGTAC 2433615 Query 9511 TGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTGGTAGCCGCTG 9570 |||||| | || ||||| || || | |||| || | ||| || ||||| ||| Sbjct 2433616 TGGAACTCTTGATTGAAAAGCAGCTCTGGGTCAAACTTCAGTTTAAAATGATAGCCACTG 2433675 Query 9571 AGCTGCTGAACATACTGCGTCACGATAATGTTGATTGTTTCCCCGATAATGATGAGTCGA 9630 || ||||| ||||| | | | | ||| || || || || | || | || || | Sbjct 2433676 AGGTGCTGCACATAGTCTTTGATCACAATCTTAATAGTCTCTTCTATGAGAATTAGCCTG 2433735 Query 9631 GTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCAC 9690 | ||||| ||||||| || || ||||| |||||||| ||| || ||||| | | Sbjct 2433736 CTTGTCTGGAACAGTTTCTCATCGTCCCATTTGGGATGTTCCTCTTTAAGCACATCACGC 2433795 Query 9691 ACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCA 9750 |||| ||| |||| | ||||| || | || |||||||| ||||| ||| |||| ||| Sbjct 2433796 ACTCGGTTAAGTTCACAAAGCCAAATGGCGGCATACATCATTAGACCTGGCGCCAGACCA 2433855 Query 9751 AAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATG 9810 || ||||||| || ||||| | || | || ||| ||||||||| Sbjct 2433856 AAGACCTCTTGCCCCACAGCAAAGCG-AAAT----------------AGGGTAGATCATG 2433898 Query 9811 TGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTGATACTTA 9870 | |||| || ||||| | ||| | |||||| || || ||||| |||||||| || Sbjct 2433899 TCTGCCTGAGTCTCCTTGACTGTGGGAGTATACATCTCTCCATCAATCATCTGATATTTC 2433958 Query 9871 TCTTTCGCGTCTCTGAAGAGACGCAACTTTGACTGTTTTTCTGGCGTCTCTCCATAGATG 9930 ||| | || |||| || | || || |||| | | | || || ||||| || Sbjct 2433959 AGTTTTCCATCCTTGAAAAGGCACAGTTTATGCTGTCTGTGCAGAGTTTCACCATAAATA 2434018 Query 9931 TGGTTGAGATCCACC 9945 || || | ||||||| Sbjct 2434019 TGATTTAAATCCACC 2434033 Score = 104 bits (114), Expect = 3e-17 Identities = 191/280 (68%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 || || ||||| || || | |||| |||||||| || | || | |||||||| | Sbjct 2433004 GGGCAGCCTTTCACATTATTGCAGATGAGAGACTGAATCGAGGCTGTGTTGACGATTTTA 2433063 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| ||||| || || ||||| | ||||| || || || || | | || Sbjct 2433064 AAACCCACTTCTCCACCAAATGTGCTATGCTTCCAATAGGTAGGAGAACATGTAAGATTA 2433123 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| || |||| | |||||| || || || || | ||| ||||||| ||| || Sbjct 2433124 CCCATCAGTTCTTTCAAGGAAAATGGCATTCCTAGTTCTACCATGGTCTCACCAAAGCTG 2433183 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | | ||| | | |||||| |||| | || |||| ||||| ||| || ||||| Sbjct 2433184 GAATCTGGAAGAGTCTTTTCTACCAGCAGGGTGGGATACAGCTCCATAGCTTCAATGTCA 2433243 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTC 8972 ||||| || ||| | || ||||| ||||||||||||| Sbjct 2433244 CCGTAGAGAGCCTCTAACTCTGCAGCCATTTCCTTTTCTC 2433283 >seq272 Length=3690327 Score = 122 bits (134), Expect = 1e-22 Identities = 200/287 (70%), Gaps = 1/287 (0%) Strand=Plus/Plus Query 8691 ACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCC 8750 |||| || ||||| | || | |||| |||| ||| | | || | |||||||| Sbjct 2345703 ACGGGCAGCCTTTCGCATTATTGCAGATGAGAGTCTGAAGCGAGGCTGTGTTGACGATTT 2345762 Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 ||| ||||| | ||| || || ||||| || ||||| || | || || || || || | Sbjct 2345763 TAAAACCCACTTTTCCACCAAACGTGCTAGGCTTCCAATAGGCAGGAGAACATATAACAT 2345822 Query 8811 TCGCCATGAGGCCT-TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 | |||| || || || | |||||| || || || || || | ||| |||| || ||| Sbjct 2345823 TACCCATCAGTCCCATTCAAGGAAAATGGTGCGCCTAGTTCTACCATGGTCTCCCCAAAG 2345882 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 ||||| | ||||| |||||||| |||| | |||| |||| ||||| ||| || ||| Sbjct 2345883 ATGGCATCTGGACGAGGCTTTTCTACCAGCAGGCCGGGATACAGCTCCATAGCTTCAATG 2345942 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || || || || || | || ||||| ||||||||||| || || Sbjct 2345943 TCACCATAGAGAGCTTCTAACTCTGCAGCCATTTCCTTTTCGCCAGT 2345989 >seq92 Length=13624840 Score = 104 bits (114), Expect = 3e-17 Identities = 172/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 || ||| ||||||| || || || | || || || || || || ||||||||||| Sbjct 513798 GTGGCAGTCTTGACAATGTTGAAACCTATCTCACCACCAAATGTACTAGGTTTCCAGTAC 513857 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 |||| || |||||| ||| | | |||||| ||||||||||| |||||||| | || Sbjct 513858 TCCGGAGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAAATTCA 513917 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTC-CACCAAG-AATCCGGTGT 8909 | || || || || ||||||| ||| ||| ||| |||| || ||| | || | || Sbjct 513918 ATCATACTTTCCCCAAAGATGGAGTTTGGA--AGGCATTTCTCAAGAAGCAGCCCCGGGT 513975 Query 8910 ACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTT 8969 | ||||||| ||| || || || || || || | | ||| || || || ||||| | Sbjct 513976 AGAACTCCATAGCATCAATATCACCATATAGCTCTTCCAATTCAGCCGCCATCTCCTTGT 514035 Query 8970 CTCCT 8974 ||||| Sbjct 514036 CTCCT 514040 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/138 (76%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || |||||||| |||| | || |||||| | || || || |||| |||| | | Sbjct 529078 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCGGGACCCATCTTGCCAG--CAGTTTTGA 529135 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| || |||||||| |||||||||||||||| | ||||||||| || |||| Sbjct 529136 AGAACTGGTGGGTAAAATGTTGTGCAAAAAAGGCAAACATGAGGTTGGTGCCTTGAGGAT 529195 Query 10147 CGGGAGTGAAGGTCCTCC 10164 | ||| |||| |||||| Sbjct 529196 CAGGAATGAACTTCCTCC 529213 >seq433 Length=1104632 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 10032 ACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAAAAC 10091 |||||||| ||||||||| | || || | || |||||| ||||| ||| | ||| || Sbjct 903727 ACCCCATGGCCCAGTCCTCTGGTAAAATCTGGCCCTCGCTTAAAATCTGTCTTGAAATAC 903786 Query 10092 TGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCGGGA 10151 || || || | |||||| |||| || | |||||| | || | || ||| ||||| || Sbjct 903787 TGATGGGTAGAGTGTTGGGCAAAGAACGTAAACATCATATTTGCGCACTGAGGATCAGGG 903846 Query 10152 GTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 |||| | || | |||||| |||||||||||| Sbjct 903847 ATGAACTTTCTTCTCAGAAGAACTTTTTCCACAAC 903881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708447145681920