Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq202 107 2e-18 seq223 89.7 5e-13 seq94 82.4 8e-11 >seq202 Length=5697000 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| ||||||||| ||| |||||||| | | | Sbjct 3906111 TTTAAAAATCGGCATCCAAGGTGAAGACATTATCTGTGGTTTCTGACATAACTGCAAAAC 3906052 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| |||||| ||||||||||| || ||||| ||||| || || Sbjct 3906051 GCTGATACTCCGAAACTCGTTTTTCAAAAAAATTTGTTTTCCCTTCTAATGAAATGTTTT 3905992 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| ||||| || Sbjct 3905991 CCATAAAATCAAAGGGATTCTC 3905970 >seq223 Length=5023716 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | |||||| ||||| || | || ||||| | ||||| || || Sbjct 3965824 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3965765 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| |||||||||||||| | || |||||||| || || ||||| || ||||| || Sbjct 3965764 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCT 3965705 Query 21620 ACTAATCGTTCACC 21633 || | ||||| || Sbjct 3965704 ACAACACGTTCTCC 3965691 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || || ||||| || | |||| ||| ||| | | ||||| | |||| Sbjct 3966822 TTCATTTAGAAGTCCGCATCCAAGGTGAAAGAATTCTCTGTTGGACTCGACATCACTCCC 3966763 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || || ||||| || | || | || || || || || ||||| ||||||| ||| ||| Sbjct 3966762 ATCTTCTGATACTCGCCTACGCGCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATA 3966703 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||||||||| |||||||| Sbjct 3966702 TTCTCCATAAAATCAAACGGATTTTC 3966677 >seq94 Length=13213440 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||||||||||||||||||||| ||||| || || || || || || || ||||| | || Sbjct 4998111 ACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGC 4998170 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 |||| | || || || ||| || | ||| ||||||||| ||| | ||||| Sbjct 4998171 TTCTGTAATCTGGACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACTGTGCCATC 4998230 Query 21886 ACTGGCGGCAAAAAATGCCA 21905 ||| || ||||| || |||| Sbjct 4998231 ACTTGCAGCAAAGAAGGCCA 4998250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531842503672320