Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq223 100 7e-16 seq44 89.7 1e-12 >seq223 Length=5023716 Score = 100 bits (110), Expect = 7e-16 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-C 22547 |||||| || | || ||||| | |||||||| || ||||||||||| | ||||| | | Sbjct 3965694 GAACGTGTTGTAGCCTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTC-TTTTGCGTC 3965752 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 ||| || ||||| || ||||| | | | ||||| || || |||||||| ||||| | || Sbjct 3965753 AATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTAT 3965812 Query 22608 TAGCCGAGATGAGG 22621 |||| ||||||||| Sbjct 3965813 TAGCAGAGATGAGG 3965826 >seq44 Length=20396770 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||| ||||| || || |||| |||||||| || || || ||| Sbjct 12614877 GCTCAGCAGCTTTGGTATGCTATCATTGAGTCTCAGACAGAGACAGGTACCCCATACATG 12614818 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||| |||| || ||||| | Sbjct 12614817 CTCTACAAAGATTCCTGTAATCGGAAGAGTAACCAGCAAAACCTGGGAACAATCAAATGC 12614758 Query 364231 AGCAACCTATGTACCGA 364247 ||||||||||| || || Sbjct 12614757 AGCAACCTATGCACAGA 12614741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303207181256576