Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq300 91.5 1e-13 seq29 87.8 2e-12 seq271 82.4 7e-11 seq98 82.4 7e-11 seq97 82.4 7e-11 seq16 82.4 7e-11 seq1 82.4 7e-11 >seq300 Length=2956037 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | ||||| || | || || | || |||||| || Sbjct 1654924 AAGATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCCC 1654865 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||||||| | |||||| || ||| ||||| || ||||| ||||| || Sbjct 1654864 AGTGACACCATCGAGAACGTCAAAGCCAAAATTCATGACAAGGAGGGCATCCCTCCTGAC 1654805 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | | ||||| ||||| || |||| | | | || || || Sbjct 1654804 CAGCAGCGTCTGATATTTGCGGGCAAACAACTAGAGGATGGCCGTACACTCTCAGACTAC 1654745 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| |||||||| || || | ||| | ||| Sbjct 1654744 AACATCCAAAAAGAGTCCACCCTGCATCTGGTG 1654712 >seq29 Length=23282948 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | ||||| || | || || | || |||||| || Sbjct 10738010 AAGATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCCC 10737951 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||||||||||| | |||||| || || ||||| || ||||| ||||| || Sbjct 10737950 AGCGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCTCCTGAC 10737891 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | | ||||| ||||| || |||| | | | || || || Sbjct 10737890 CAGCAGCGTCTGATATTTGCAGGCAAACAACTAGAGGATGGCCGTACACTCTCAGACTAC 10737831 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || ||||| || || | ||| | ||| Sbjct 10737830 AACATCCAGAAAGAGTCCACCCTGCATCTGGTG 10737798 >seq271 Length=3743906 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || || | || |||||| ||| Sbjct 1490983 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 1490924 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| || || ||||| || ||||| ||||| || || Sbjct 1490923 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCTCCTGACCAG 1490864 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | ||||| ||||| || |||| | | | || || || ||| Sbjct 1490863 CAGCGTCTGATATTTGCAGGCAAACAACTAGAGGATGGCCGTACACTCTCAGACTACAAC 1490804 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||| || || | ||| | ||| Sbjct 1490803 ATCCAGAAAGAGTCCACCCTGCATCTGGTG 1490774 >seq98 Length=13236748 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | ||||| || | || || | || |||||| || Sbjct 3382940 AAGATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCCC 3382881 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||||||| | |||||| || || ||||| || ||||| ||||| || Sbjct 3382880 AGTGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCTCCTGAC 3382821 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | | ||||| ||||| || |||| | | | || || || Sbjct 3382820 CAGCAGCGTCTGATATTTGCGGGCAAACAACTAGAGGATGGCCGTACACTCTCAGAGTAC 3382761 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || ||||| || || | ||| | ||| Sbjct 3382760 AACATCCAGAAAGAGTCCACCCTGCATCTGGTG 3382728 >seq97 Length=13319445 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | ||||| || | || || | || |||||| || Sbjct 13186802 AAGATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCCC 13186743 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||||||| | |||||| || || ||||| || ||||| ||||| || Sbjct 13186742 AGTGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCTCCTGAC 13186683 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | | ||||| ||||| || |||| | | | || || || Sbjct 13186682 CAGCAGCGTCTGATATTTGCGGGCAAACAACTAGAGGATGGCCGTACACTCTCAGACTAC 13186623 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || ||||| || || | ||| | ||| Sbjct 13186622 AACATCCAGAAAGAGTCCACCCTGCATCTGGTG 13186590 >seq16 Length=30800738 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGG-AAAATCGATTACCATCGAAGTCGAGGCCA 24048 |||||| | ||||| || || || ||||| |||||| || ||| | || | ||| | | Sbjct 5646557 AATGCAGATCTTTGTGAAGACCTTGACTGGCAAAATC-ATCACCCTTGACATTGAGCCAA 5646615 Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 |||||||| ||| | ||||| |||||| | |||||||||||| || || || | Sbjct 5646616 GTGACACCATTGAGAATGTCAAGGCAAAGATCCAAGGCAAAGAAGGCATCCCCCCTGACC 5646675 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTA 24166 | ||||| ||||| | | || || || || |||||| |||| | | ||| || || Sbjct 5646676 AGCAGAGGCTGATCTTTGCTGGTAAACAGCTGGAAGATGGACACACCCTGTC--TGAATA 5646733 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTT 24196 ||||| || ||||| || || || |||| Sbjct 5646734 CAACATCCAGAAAGAGTCCACTATGGATTT 5646763 >seq1 Length=49259779 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || || | ||||| || | || || | || |||||| || Sbjct 8358303 AAGATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCCC 8358244 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||||||| | |||||| || || ||||| || ||||| ||||| || Sbjct 8358243 AGTGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCTCCTGAC 8358184 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | | ||||| ||||| || |||| | | | || || || Sbjct 8358183 CAGCAGCGTCTGATATTTGCGGGCAAACAACTAGAGGATGGCCGTACACTCTCAGACTAC 8358124 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || ||||| || || | ||| | ||| Sbjct 8358123 AACATCCAGAAAGAGTCCACCCTGCATCTGGTG 8358091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429890057039040