Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq300 86.0 5e-12 seq44 82.4 6e-11 >seq300 Length=2956037 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||| ||||| || ||||| || || || || || || ||||| || | || ||| | Sbjct 1654925 AAAGATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCC 1654866 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 ||| ||||| | | | || ||| |||||| || || || ||| |||| ||| Sbjct 1654865 CAGTGACACCATCGAGAACGTCAAAGCCAAAATTCATGACAAGGAGGGCATCCCTCCTGA 1654806 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||| | || || | ||||||||||||| |||| |||| | || | | || || Sbjct 1654805 CCAGCAGCGTCTGATATTTGCGGGCAAACAACTAGAGGATGGCCGTACACTCTCAGACTA 1654746 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||| ||||||||||| || | ||| ||||| || Sbjct 1654745 CAACATCCAAAAAGAGTCCACCCTGCATCTGGTGCTG 1654709 >seq44 Length=20396770 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| |||||| | || ||||||||||||||| || | ||| || || ||| | ||| Sbjct 12728878 GATAAGGAAGGCATTCCTCCTGATCAGCAAAGACTCATCTTTGCTGGAAAGCAACTGGAA 12728937 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | ||| || | ||||| ||||| ||||| ||||| ||| | || | || ||| Sbjct 12728938 GATGGGCAGACCCTGTCTGATTACAACATCCAAAAGGAGTCCACTCTTCACCTTGTATTG 12728997 Query 115499 AGA 115501 ||| Sbjct 12728998 AGA 12729000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425298547740160