Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq94 224 1e-53 seq11 172 7e-38 seq51 140 4e-28 seq223 129 7e-25 seq202 120 4e-22 seq44 114 2e-20 seq2236 98.7 1e-15 seq8 87.8 2e-12 >seq94 Length=13213440 Score = 224 bits (248), Expect = 1e-53 Identities = 416/603 (69%), Gaps = 18/603 (3%) Strand=Plus/Plus Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 ||||| |||| || || || || ||||||| || || ||||| ||| | | ||| Sbjct 4997813 TGTTTGAACAGCAGGTGAGCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGTTCA 4997872 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 ||||||| ||||| || |||| || | | || || ||||| ||||| || ||||| Sbjct 4997873 CTGGAAAATGTGAGGCCAGGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCAAAA 4997932 Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 32825 || | || |||| ||||||| ||||| |||||||| | | |||||||| || | Sbjct 4997933 GAACTGGAGAAGA---TTCCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTA---G 4997986 Query 32826 GCGCTGTCAT-GTATCCA---CTTTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGC 32879 | | || | || ||| | | ||||| || || ||| |||||||| ||| Sbjct 4997987 GTAATTTCTTTGTTCCCAGCCCAACGCAAGGCCCAGTCTGCTGCCTTCTTTACACAGGGC 4998046 Query 32880 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 32939 ||||| || || ||||| | |||| | | ||| ||| |||||||| ||| ||| Sbjct 4998047 ATTGTTTCAATGGCATTGATGAGAAATTCCCATTCCTTAGGATCTTTAA----TGTGTCA 4998102 Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 || | |||||||||||||| ||||| |||||||| ||||| ||||| || || ||||| Sbjct 4998103 ATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 4998162 Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33059 || | || || |||||||| |||||| | ||| || || | | |||||||||||| Sbjct 4998163 CAGCGGGCTTCTGTAATCTGGACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACT 4998222 Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33119 | || ||||| || ||||| || |||| ||||| |||||| || | || || | Sbjct 4998223 GTGCCATCACTTGCAGCAAAGAAGGCCAGAACATGGGATATAAAGTAACTCTCCTCAGAC 4998282 Query 33120 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCA-CTTCTTCCACTGTCCAAAA 33178 | || | ||| | | || ||||| || | ||| | || ||| | | ||||| Sbjct 4998283 TTAAGGGCTTCCCAGTGCTAAATGTCTTTGGAAAGATCAATCTCCTTGGTGT-TTCAAAA 4998341 Query 33179 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 33238 || |||| || || ||| |||| | ||| |||||||| |||| || ||||||| || Sbjct 4998342 GGAAGCCTGAGCTTTCTTAGACATCTGCCAAATGTCATGGTATTCAACAGGAAAAACGAC 4998401 Query 33239 AAA 33241 ||| Sbjct 4998402 AAA 4998404 >seq11 Length=32252908 Score = 172 bits (190), Expect = 7e-38 Identities = 288/425 (68%), Gaps = 35/425 (8%) Strand=Plus/Plus Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 ||||| |||| | || || || || ||||||| |||||| ||||||| || | ||| Sbjct 31685059 TGTTTGAACACTAGGCAAGCAAAGTCACAGTGTACACCCTCAACTCTACTCATAAGTTCA 31685118 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 |||||||| ||| | || ||| |||| || | || || ||||| ||||| | | |||| Sbjct 31685119 TTGGAAAATGTGGGGCCAGGCCTTAGTCCTCATTTCTTGAGCCAGAATATTGGCACAAA- 31685177 Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 32825 || ||||| |||| |||||||| ||||| || ||||| | || | | ||||| | | Sbjct 31685178 GAAGCAGAACAGAAGATTCCTTCCACTGCTGCCAAGGCTACAACACGTTTTCCATCAGCA 31685237 Query 32826 GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885 || ||||| |||||||| ||||| | Sbjct 31685238 GC----------------------------------TTCTTCTTTACACAGGGCATCATT 31685263 Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 || || ||||| |||||| | | ||| ||| |||||||| || || ||||| | Sbjct 31685264 TCAATGGCATTGAAGAGAAATTCCCATTCCTTAGGATCTTTAATGTAAGTGTCAATAAGG 31685323 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 |||||||||||||| ||||| |||||||| | ||| ||||| || || |||| || | Sbjct 31685324 AGACTATACATTTCAGAATGTATGTTTTCCAAGGCAATTTGGAAGCCACAGAAACAGTGA 31685383 Query 33006 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 33065 || || |||||| |||||| | ||| ||||||| | ||||| |||||||| || Sbjct 31685384 GCTTCTGTAATCCAGACTTCTTGGCTAAACCGTTCTGTCAGGTTTTCGTTCACTATGCCA 31685443 Query 33066 TCACT 33070 ||||| Sbjct 31685444 TCACT 31685448 >seq51 Length=18525102 Score = 140 bits (154), Expect = 4e-28 Identities = 379/581 (65%), Gaps = 28/581 (5%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || |||||||||| |||||| ||||| || | | ||| ||||||| ||||| Sbjct 17120055 CAAGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTGACAAGTTCAGTGGAAAATGTGAGG 17120114 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||||| | || || ||||| ||| | ||||| || || | || || Sbjct 17120115 CCAGGCATTAATCTTTATTTCTTGAGCCAGGGTATCAATGCAAAGGAAGCAAAGAATAAG 17120174 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 32840 |||||||| ||| | ||||| || | || |||||||| ||| | | Sbjct 17120175 ATTCCTTCCACTACTGCAAATGCTACAACACTCTCTCCTTAATC---------------C 17120219 Query 32841 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 32900 || | | ||| || |||||||| || ||| | |||| | || || ||||| ||| Sbjct 17120220 AACACAAG-GACCAGTCTGCCTTCTTCTTCACAAAGGGCACCATTTCAATGGCATTGAAG 17120278 Query 32901 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 32960 | | | | ||| ||| |||||||| |||||||| | ||||||| ||||| Sbjct 17120279 ACAAATTCCCATTCCTTAGGATCTTTAA-----GTATCAATAATGAGACTATCTATTTCA 17120333 Query 32961 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGT 33020 ||| | |||||||| ||||||||||| || | ||||| || || || | | || Sbjct 17120334 GAACGGATGTTTTCCATGGCCATTTGGAAGTCATAGAAACAGTGGGCTTCTG---TGTGG 17120390 Query 33021 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 |||||| | ||| | ||| | | ||||| ||| || | | | ||||||| Sbjct 17120391 ACTTCTTGGCTAAACCACTCTATGAGGT----ATTCATTATGCCATTATTTTCTGCAAAG 17120446 Query 33081 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33140 || ||| ||||| | |||||||| | || || | | || | ||| | | Sbjct 17120447 AAGTCCAGAACATGGGATGTAAAATATCTCTCCTCAGACTTCAGGGCTTCCCAGTGTTGA 17120506 Query 33141 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33200 || | || || | ||||| || || | ||||| || || ||||| || | ||||| Sbjct 17120507 ATGCCCTTGGAAAGATCCATCTCCTCAGCAGTCCACAAGGAAGCCTCAGCTTGCTTATAT 17120566 Query 33201 ATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 | | ||| ||||||| ||||| | | ||||| || ||||| Sbjct 17120567 AGCTGCCAAATGTCATAATATTCACTAGGAAAGATGACAAA 17120607 >seq223 Length=5023716 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 3965826 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 3965767 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| |||||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 3965766 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGG 3965707 Query 32803 C 32803 | Sbjct 3965706 C 3965706 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| ||| |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 3962640 ATCTTTAATATAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3962581 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || || ||||| || | ||| || |||| ||| |||||| Sbjct 3962580 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAACCTGGACTTCT 3962535 >seq202 Length=5697000 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| |||||||| ||||| ||||| | ||| || Sbjct 3890747 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGGCCTCTCTTCTTC 3890688 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| || || | ||||| |||||||| ||||||||||||||||| ||||||||||| Sbjct 3890687 AGCCAGAAAATCGCAGCAAAAGATCCAGAGAAGAAAATTCCTTCTACAGCCGCAAAGGC 3890629 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || ||||||||||||||||| ||||||| ||| | ||||||||| ||||| || || | Sbjct 3875706 ACCTCTTCCACTGTCCAAAAGGATGCCTGTGCTTGTTTATACATCTTCCAAATATCCGGG 3875647 Query 33219 TATTGAATTGGAAAAATAACAAATC 33243 || || ||||| || || ||||||| Sbjct 3875646 TACTGGATTGGGAAGATGACAAATC 3875622 >seq44 Length=20396770 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| |||||||| || ||||| |||| |||||||| || || |||||||| | ||| | Sbjct 12601427 TACCTGAAATTCCCCTGACAAGACTCGGCGAGTGTAGATGTTGCTGGTATAAGCTTCAAT 12601486 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 |||||||||||| || | || ||||||||||| ||||| ||||| || || | | ||| Sbjct 12601487 AGACTCATTATTCCCAAGTATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 12601546 Query 62311 ACTATTTCTAAGACCGTA 62328 ||| ||||| | ||| || Sbjct 12601547 ACTGTTTCTTACACCATA 12601564 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| ||||| || ||||||||||| || | ||||||||| |||| | Sbjct 12616085 CTCCACTCGTTTCATGAAGAGGTCTGGAATCCAAAGGGCAAAAAATAGATCCCTGGCACG 12616144 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || ||||| || ||||| || | ||| |||||| | | || || ||||||| Sbjct 12616145 CTGTTCTTCCTTTCCCGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 12616204 Query 63187 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63219 || |||||||| || || | ||||||| || Sbjct 12616205 TGGCTCCAAGTAAATAGCAAATGCTCCAGGTCG 12616237 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| ||||||||||| || |||||| ||| | || || || || ||||| | Sbjct 12594163 TCCAGCCGTAGAAATGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 12594222 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 12594223 TCAGAGACTGGCTTTGATCTATGAAAGCCCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 12594282 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 |||| | ||||||||| | || ||||||| |||| | || || |||| Sbjct 12594283 TTTGAGAAATTTCCCACACCGTCTTATAAAGCTGCTTCAAGTCATCGGGAA 12594333 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 63461 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGT 63520 ||| | || || ||||| || | |||||||||||| ||||||||||| || ||||| || Sbjct 12623874 CGATTGGTCCCAGCATTGAAGAGGGTAGGAGAAGCATGAGTAAACCACTTCTCAGACAGA 12623933 Query 63521 AGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGC 63580 || ||||| || |||||||| | || ||||| || ||||| || || | || | | Sbjct 12623934 AGGTTGTATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCGACAGATACCCTC 12623993 Query 63581 ATTAACATGTGCTGAGGTCTTTCA 63604 || | ||| ||||| ||||||||| Sbjct 12623994 ATCAGCATATGCTGTGGTCTTTCA 12624017 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 || ||| |||| || ||||| || || || || ||| ||||||||||| || || || Sbjct 12613386 GAGCCTTCATAGGTTTCGTAAGGGCCAAGCTCCTTAGCCAGTTCACAACTGGCTTCCAAA 12613445 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542 || || |||||||||||||| || || | ||||| || || || || | || ||| Sbjct 12613446 GCTCCATAATAAATGGTTTCAAATATTTGTTTATTCAGTAACTGGGCCTCTGGACTCTCA 12613505 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 || ||||| | | || || || || ||||||| ||||| || ||||| || || || Sbjct 12613506 AAAGGATATCTCATCAGGATGAAAGCATCTGCTAGACCTTGGACCCCAATTCCAATGGGA 12613565 Query 62603 CTATGTCTCTTATTAGA 62619 | ||| | ||||| || Sbjct 12613566 CGATGGCGTTTATTTGA 12613582 >seq2236 Length=6892 Score = 98.7 bits (108), Expect = 1e-15 Identities = 208/308 (68%), Gaps = 7/308 (2%) Strand=Plus/Minus Query 30452 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 30511 ||| ||||| | | |||||||||| | || |||| | | || ||||| || || | ||| Sbjct 2855 TTGAACTTCCTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGATC 2796 Query 30512 CCCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 30571 || | ||||| ||| | ||| ||| ||||| || | || || | |||||| Sbjct 2795 AACCTTTTTTACTCCAAATTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCC 2736 Query 30572 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAATGCC---TTTTAGGGACAGACC 30628 || |||||||| ||||| ||||| |||||| ||| ||| |||| | || || Sbjct 2735 TCTGTAATCTTCATCTATCACACCAGCTCCTACATCTATGAAATGTTTTTCAGCCAAGCC 2676 Query 30629 AGACCTAGGAGCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTT 30688 ||| | ||||||| ||| |||| || || ||| | || || ||| ||||| || Sbjct 2675 AGAACGTGGAGCTACTCTTTCATAACACCCCTAAGGAAGGGCTATCTGAATGTCTGTTTT 2616 Query 30689 AATTAATTGTCTTTCTCCT--GGAGGGATAGTATAATCATAAGCGCTATATAAATCATAT 30746 | | | |||||||| || || | |||||||||||||| || || || || || Sbjct 2615 CACAAG--GGCTTTCTCCATGGGTGGAACGGTATAATCATAAGCACTGTACAAGTCGTAG 2558 Query 30747 CCGGCAGC 30754 || || || Sbjct 2557 CCTGCGGC 2550 >seq8 Length=38200284 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 ||||||||||| || ||||| ||||||||||||||||| || || | || |||||| Sbjct 15304836 AAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 15304895 Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 33164 || || || |||||| | || | ||||| | | || ||| || |||| || || ||| Sbjct 15304896 TACTTCTCATCTGGTTTAAGCCTGTTCCAGTGAGGGAAATCATTTGATAAGTCAACCTCT 15304955 Query 33165 TCCACT 33170 |||||| Sbjct 15304956 TCCACT 15304961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633562553932800