Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq108 102 7e-17 seq324 100 2e-16 seq178 98.7 9e-16 seq4 96.9 3e-15 seq286 93.3 4e-14 seq209 93.3 4e-14 seq195 93.3 4e-14 seq35 93.3 4e-14 seq141 89.7 4e-13 seq118 86.0 5e-12 seq90 86.0 5e-12 >seq108 Length=12252355 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||| | || || || ||||||| | || |||||| | Sbjct 7287831 AATGCAAATCTTTGTAAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAG 7287772 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| ||||| || ||| || ||||| || || ||||| ||||| Sbjct 7287771 CGATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCACCCGACCA 7287712 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | ||||||| |||||||| || ||||| Sbjct 7287711 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTGTTTCTGACTACAA 7287652 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 7287651 CATCCAGAAAGAGTCAACTCTGCA 7287628 >seq324 Length=2564792 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||| | || || || ||||||| | || |||||| | Sbjct 465363 AATGCAAATCTTTGTAAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAG 465304 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| ||||| || ||| || ||||| || || ||||| ||||| Sbjct 465303 CGATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCACCCGACCA 465244 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | ||||||| |||||| | || ||||| Sbjct 465243 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 465184 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| || || || || | || || | || ||||| || Sbjct 465183 CATCCAGAAAGAGTCAACCCTGCACCTCGTTCTTCGTCTGAGAGGTGG 465136 >seq178 Length=6940393 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||| | || || || ||||||| | || |||||| | Sbjct 1609797 AATGCAAATCTTTGTAAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAG 1609738 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| ||||| || ||| || ||||| || || ||||| ||||| Sbjct 1609737 CGATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCACCCGACCA 1609678 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | ||||||| |||||| | || ||||| Sbjct 1609677 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 1609618 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 1609617 CATCCAGAAAGAGTCAACTCTGCA 1609594 >seq4 Length=39680227 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||| | || || || ||||||| | || |||||| | Sbjct 4681130 AATGCAAATCTTTGTAAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAG 4681071 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| ||||| || ||| || ||||| || || ||||| ||||| Sbjct 4681070 CGATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCACCCGACCA 4681011 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | ||||||| |||||| | || ||||| Sbjct 4681010 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 4680951 Query 25178 TATTCAAAAAGAATCCACGCT 25198 || || ||||| || || || Sbjct 4680950 CATCCAGAAAGAGTCAACTCT 4680930 >seq286 Length=3233792 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || ||||| ||||||||||| || || ||||| | || | || ||| | Sbjct 965554 ACAATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCGCCCTCAAGGTCGAGCCC 965495 Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | |||| || || | || ||| || ||| ||||| ||||| || || |||| Sbjct 965494 AGTAACACCATTGA--AAATGCCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCTG 965437 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| ||| || | || ||||| || || || | ||||||| ||||| || || | Sbjct 965436 ACCAGCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACT 965377 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || || ||||| ||||| || || | ||||| Sbjct 965376 ACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 965340 >seq209 Length=5345101 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||||||||| | || || || ||||||| | || |||||| | Sbjct 3118031 AATGCAGATCTTTGTAAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAG 3117972 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 | || |||||| ||||| || ||| || ||||| || || ||||| ||||| Sbjct 3117971 CAATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCACCCGACCA 3117912 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || ||||| ||||| || | ||||||| |||||| | || ||||| Sbjct 3117911 ACAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 3117852 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 3117851 CATCCAGAAAGAGTCAACTCTGCA 3117828 >seq195 Length=6191121 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||| | || || || ||||||| | || |||||| | Sbjct 973362 AATGCAAATCTTTGTAAAGACCCTCACTGGCAAGACCATCACTCTAGAGGTGGAGCCCAG 973421 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| ||||| || ||| || ||||| || || ||||| ||| | Sbjct 973422 CGATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCACCCGACGA 973481 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | ||||||| |||||| | || ||||| Sbjct 973482 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 973541 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 973542 CATCCAGAAAGAGTCAACCCTGCA 973565 >seq35 Length=21762371 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||| | || || || ||||||| | || |||||| | Sbjct 4093986 AATGCAAATTTTTGTAAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAG 4093927 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| ||||| || ||| || ||||| || || ||||| ||||| Sbjct 4093926 CGATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCACCCGACCA 4093867 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | || |||| |||||| | || ||||| Sbjct 4093866 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGACGATGGCCGCACTCTTTCTGACTACAA 4093807 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 4093806 CATCCAGAAAGAGTCAACTCTGCA 4093783 >seq141 Length=8851405 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||||| ||||||| |||| || || | Sbjct 8265101 ATGCAGATCTTCGTCAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTCAAGCCCAGC 8265042 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| || || |||||||| Sbjct 8265041 GACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAGGAAGGCATCCCCCCTGACCAG 8264982 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | | ||||||||||| || | ||||||| ||||| || || ||||| Sbjct 8264981 CAGAGGCTGACCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 8264922 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || | || || ||||| || || || || || Sbjct 8264921 ATCTAGAAGGAGTCCACTCTGCACTTGGTCCT 8264890 >seq118 Length=10455207 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||| || || ||| ||| | || || ||| | | Sbjct 9349695 ATGCAGATCTTTGTGGAGACTCTGAATGGCAAGACCACCACTCTTGAGGTCGAGCCCAGT 9349754 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGG-ATTCCACCTGA 25114 ||||| |||||| | || |||| |||| || ||||| |||||| || || ||||| Sbjct 9349755 GACACCATCGAG--AATGTCAAAGCCAAAA-TCTAAGACAA-GAAGGGCATCCCTCCTGA 9349810 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || |||||||||||||| |||| |||||| | || | || | Sbjct 9349811 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTAGAGGATGATTGGACGCTCCCAGACCA 9349870 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || ||||| ||| || ||| | ||||| Sbjct 9349871 CAACATCCAGAAAGAGGGCACCCTGCATCTGGTGCT 9349906 >seq90 Length=14078501 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 ||| || ||| | || ||||| ||||| |||| || || ||||||| | || || | Sbjct 13823111 ACGCAAAGATGAAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCG 13823170 Query 25051 AGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || | |||||| |||||| | ||| |||||| ||||| || | || || | Sbjct 13823171 AGCCCAGTGACACCATCGAGAATGTCAAGGCCAAAATCCAAGACAAGGAGGTCATCCCTC 13823230 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 ||||||| |||| || || ||||| | |||| | |||| ||| || || | | Sbjct 13823231 CTGACCAGCAGCATATGATATTTGCGGACAAAGAGCTAGAGGATAGCCGTACACTCTCAG 13823290 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||| || || ||||||||||| || ||| | ||||| Sbjct 13823291 ACTACAACATCCAGAAAGAATCCACCCTGCATCTGGTGCT 13823330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433281694569920