Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq94 183 3e-41 seq223 105 7e-18 seq11 89.7 6e-13 >seq94 Length=13213440 Score = 183 bits (202), Expect = 3e-41 Identities = 397/588 (68%), Gaps = 21/588 (4%) Strand=Plus/Plus Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACC 93153 |||||||| ||||| ||||| |||| || || || | || || ||||| | || Sbjct 4997831 GCAAAGTCACAGTGTAAGCCTTCATCTC-TGCTAGTAAGTTCACTGGAAAATGTGAGGCC 4997889 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 || | |||| ||| |||||||||||| |||||||| |||||| || || || | | Sbjct 4997890 AGGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACTGGAGAAGATT-- 4997947 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT 93273 |||||||| |||||||| || || | || || | | | |||| || || | Sbjct 4997948 -CCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTAGGT-----AATTTCTT-TGTT 4998000 Query 93274 CC------ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 || | || ||||| || ||| ||||| | ||| || | |||||| || || Sbjct 4998001 CCCAGCCCAACGCAAGGCCCAGTCTGCTGCCTTCTTTACACAGGGCATTGTTTCAATGGC 4998060 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || | || | || | || | | |||| || |||| || || | ||| ||| Sbjct 4998061 ATTGATGAGAAATTCCCATTCCTTAGGATCTT-TA---ATGTGTCAATAAGGAGACTATA 4998116 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 |||||||||||| | || ||||| ||||||||||| || |||||||| | ||||| || Sbjct 4998117 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 4998176 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 ||||| |||||||| ||| | ||| || || |||||||| ||| | ||||| ||| Sbjct 4998177 AATCTGGACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACTGTGCCATCACTTGC 4998236 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCA 93567 ||||| || |||| | ||| |||||| | |||| ||| ||||| ||||| Sbjct 4998237 AGCAAAGAAGGCCAGAACATGGGATATAAAGTAACTCTCCTCAGACTTAAGGGCTTCCCA 4998296 Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 | | | ||||| |||||||| | || | | | ||||| || || | ||||| Sbjct 4998297 GTGCTAAATGTCTTTGGAAAGATCAATCTCCTTGGTGTTTCAAAAGGAAGCCTGAGCTTT 4998356 Query 93628 TTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 || |||| | ||| ||||| || |||| || ||||| | |||||| Sbjct 4998357 CTTAGACATCTGCCAAATGTCATGGTATTCAACAGGAAAAACGACAAA 4998404 >seq223 Length=5023716 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| || || | || || | ||||||||||||||||||||| |||||||| ||| Sbjct 3965806 TCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGACGCA 3965747 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || ||||| || |||||||| || |||| |||||| Sbjct 3965746 AAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACAACACGTTC 3965694 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || ||||| || | ||| ||||||||||||||| | || ||||| ||||||||| Sbjct 3962633 ATATAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 3962574 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || || |||||||| | |||||| || | ||| |||||||| Sbjct 3962573 AAGCCATAGAAACAGCGAGCTTCTGTAACCTGGACTTCTTG 3962533 >seq11 Length=32252908 Score = 89.7 bits (98), Expect = 6e-13 Identities = 298/466 (64%), Gaps = 42/466 (9%) Strand=Plus/Plus Query 93038 ATTTCTATTACTCTACTATT-TGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 |||||| || || | || || || ||||| ||||| | | ||| ||| || ||| || Sbjct 31685020 ATTTCTTTTTCT-TGCTTTTCTGAGGGTTTATGTACCAGGTGTTTGAACACTAGGCAAGC 31685078 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 |||||| |||| ||| || ||| || | |||||| ||||| || || Sbjct 31685079 AAAGTCACAGTGTACACCCTCAACTCTACTCATAAGTTCATTGGAAAATGTGGGGCCAGG 31685138 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATAC 93215 ||||||| |||||||||||| ||||||| ||| ||| | ||||| | || || | Sbjct 31685139 CCTTAGTCCTCATTTCTTGAGCCAGAATATTG--GCACAAAGAAGCAGAACAGAAGATTC 31685196 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 ||||||| ||||| || || |||| ||||| ||| Sbjct 31685197 CTTCCACTGCTGCCAAGGCTACAACACGTTT--------------------------TCC 31685230 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 || | | |||| || ||| | ||| || | |||| || || || || | Sbjct 31685231 ATC----------AGCAGCTTCTT-CTTTACACAGGGCATCATTTCAATGGCATTGAAGA 31685279 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | | || | || | | |||| ||||| || || || | ||| ||||||||||| Sbjct 31685280 GAAATTCCCATTCCTTAGGATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAG 31685339 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 |||| | || |||| ||||||||||| || ||||||| |||||| || ||| | Sbjct 31685340 AATGTATGTTTTCCAAGGCAATTTGGAAGCCACAGAAACAGTGAGCTTCTGTAATCCAGA 31685399 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 ||||||| ||| | ||| || ||||| || ||||| ||||| Sbjct 31685400 CTTCTTGGCTAAACCGTTCTGTCAGGTTTTCGTTCACTATGCCATC 31685445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556799768056320