Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq38 98.7 2e-15 seq168 95.1 2e-14 seq184 93.3 9e-14 seq391 91.5 3e-13 seq260 89.7 1e-12 seq221 89.7 1e-12 seq256 86.0 1e-11 seq176 86.0 1e-11 seq39 84.2 4e-11 >seq38 Length=21786810 Score = 98.7 bits (108), Expect = 2e-15 Identities = 71/81 (88%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 142495 GGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTG 142554 ||| ||| ||||||| |||||||||||||||||| ||||||||||||| | |||| || Sbjct 14494075 GGTAAGA-AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCGGGGTCATG 14494133 Query 142555 GGTTCGAGCCCCACATCGGGC 142575 |||||||||||||||| |||| Sbjct 14494134 GGTTCGAGCCCCACATTGGGC 14494154 >seq168 Length=7563430 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 3355403 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 3355344 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 3355343 TCCCGGCAGAGA 3355332 >seq184 Length=6332433 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 6312968 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 6313027 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 6313028 GCCCCACGTTGGGC 6313041 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||| ||||| ||||||||||||| |||||||||||||||| Sbjct 6331974 GCCCGGCTAGCTCAGTCGGCAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 6332033 Query 142564 CCCACATCGGG 142574 ||||| | ||| Sbjct 6332034 CCCACGTTGGG 6332044 >seq391 Length=1626971 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1412241 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1412182 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| | ||| Sbjct 1412181 CCCACGTTGGGCGGTAGT 1412164 >seq260 Length=4120640 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 200814 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 200755 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 200754 CCCACGTTGGGC 200743 >seq221 Length=5055060 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 4598700 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4598759 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 4598760 CCCACGTTGGGC 4598771 >seq256 Length=4280264 Score = 86.0 bits (94), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 1804280 CCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCC 1804339 Query 142565 CCACATCGGG 142574 |||| | ||| Sbjct 1804340 CCACGTTGGG 1804349 >seq176 Length=6760464 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| ||||||||||| |||| Sbjct 4461107 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTTGAGC 4461166 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 4461167 CCCACGTTGGGC 4461178 >seq39 Length=21554728 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| | ||||||||||| |||||||||||| | Sbjct 6762246 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAAACTCTTAATCTCAGGGTCGTGGGTTCAA 6762187 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 6762186 GCCCCACGTTGGGC 6762173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027721332813888