Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10]
8,768 sequences; 3,843,982,861 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq145 105 6e-18
seq33 105 6e-18
seq71 100 2e-16
seq257 96.9 3e-15
seq179 96.9 3e-15
seq16 93.3 4e-14
seq90 91.5 1e-13
seq376 89.7 4e-13
seq79 89.7 4e-13
seq57 87.8 2e-12
seq111 84.2 2e-11
seq296 82.4 6e-11
seq254 82.4 6e-11
>seq145
Length=8547294
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | || | || || || || || |||||||| ||
Sbjct 6750823 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTGTGGATGTTGTAGTCAGA 6750882
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || || |||||| || ||||| ||||| ||||||| | ||| || || |||||
Sbjct 6750883 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 6750942
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| ||||| ||||| || | | |||| ||||| | || ||| ||
Sbjct 6750943 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATTGTGTCCGAGGGTTCAAC 6751002
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | | | || || || || || ||||||||||||||||||||
Sbjct 6751003 CTCGAGCATGATGGTCTTCCCCGTGAGGGTTTTTACAAAAATCTGCAT 6751050
>seq33
Length=21904142
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | ||| | || || || || || |||||||| ||
Sbjct 10626731 ACCACCACGAAGTCTCAATACAAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 10626790
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || || |||||| || ||||| ||||| ||||||| | ||| || || |||||
Sbjct 10626791 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 10626850
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| ||||| ||||| || | | || | ||||| | || ||| ||
Sbjct 10626851 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAAC 10626910
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || || || |||||||| |||||||||||
Sbjct 10626911 CTCGAGCGTGATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 10626958
>seq71
Length=16036057
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | || | || || || || || |||||||| ||
Sbjct 9284272 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 9284331
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || || |||||| || ||||| ||||| ||||||| | ||| || || |||||
Sbjct 9284332 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 9284391
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| ||||| ||||| || | | || | ||||| | || ||| ||
Sbjct 9284392 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAAC 9284451
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || || || |||||||| |||||||||||
Sbjct 9284452 CTCGAGCGTGATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 9284499
>seq257
Length=4087618
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||| | |||||||| || | || | || || || || || |||||||| ||
Sbjct 3395636 ACCACCATGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 3395577
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || || |||||| || ||||| ||||| ||||||| | ||| || || |||||
Sbjct 3395576 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 3395517
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| ||||| ||||| || | | || | ||||| | || ||| ||
Sbjct 3395516 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCCGAGGGTTCAAC 3395457
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || || || |||||||| |||||||||||
Sbjct 3395456 CTCGAGCGTGATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 3395409
>seq179
Length=6907437
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | || | || || || || | |||||||| ||
Sbjct 5669988 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTCAGGATGTTGTAGTCAGA 5669929
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || || |||||| || ||||| ||||| ||||||| | ||| || || |||||
Sbjct 5669928 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 5669869
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| ||||| ||||| || | | || | ||||| | || ||| ||
Sbjct 5669868 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAAC 5669809
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || || || |||||||| |||||||||||
Sbjct 5669808 CTCGAGCGTGATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 5669761
>seq16
Length=30800738
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 114177 AAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGT 114236
|||| || || || ||||| || |||||||| || || || | |||||| ||
Sbjct 5646763 AAATCCATAGTGGACTCTTTCTGGATGTTGTATTCAGACAGGGTGTGTCCATCTTCCAGC 5646704
Query 114237 TGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATC 114296
||||||||||| |||| || | ||| ||||| || || |||||||||||| | |||
Sbjct 5646703 TGTTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGCCTTGGATC 5646644
Query 114297 TTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCG 114356
||| || | | |||| |||||| | | || | ||| | ||| | |||||||
Sbjct 5646643 TTTGCCTTGACATTCTCAATGGTGTCACTTGGCTCAATGTCAAGGGTGATGATTTTGCCA 5646584
Query 114357 GTCAGAGTTTTTACAAAAATCTGCAT 114382
|||| || || ||||| ||||||||
Sbjct 5646583 GTCAAGGTCTTCACAAAGATCTGCAT 5646558
>seq90
Length=14078501
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | || | || || || || || |||||||| ||
Sbjct 1431075 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1431134
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || || |||||| || ||||| ||||| ||||||| | ||| || || |||||
Sbjct 1431135 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 1431194
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| ||||| ||||| || | | || | ||||| | || ||| ||
Sbjct 1431195 AATTCCTTCCTTGTCCTGGATCTTGGCGTTGACATTCTCGATTGTGTCCGAGGGTTCAAC 1431254
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
| | | | || || || || || |||||||| |||||||||||
Sbjct 1431255 CTTGAGCATGATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 1431302
>seq376
Length=1842245
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | || | || || || || || |||||||| ||
Sbjct 549717 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 549776
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || || |||||| || ||||| ||||| ||||||| | ||| || || |||||
Sbjct 549777 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 549836
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| ||||| ||||| || | | || | ||||| | || ||| |
Sbjct 549837 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAGC 549896
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | | | || || || || || |||||||| |||||||||||
Sbjct 549897 CTCGAGCG--ATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 549942
>seq79
Length=15399603
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/228 (69%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | || | || || || | | |||||||| ||
Sbjct 5413675 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCT---GGATGTTGTAGTCAGA 5413619
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || || |||||| || ||||| ||||| ||||||| | ||| || || |||||
Sbjct 5413618 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 5413559
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| ||||| ||||| || | | || | ||||| | || ||| ||
Sbjct 5413558 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAAC 5413499
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || || || |||||||| |||||||||||
Sbjct 5413498 CTCGAGCGTGATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 5413451
>seq57
Length=17858683
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | || | || || || || || |||||||| ||
Sbjct 12642175 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 12642234
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || || |||||| || ||||| ||||| ||||||| | ||| | || |||||
Sbjct 12642235 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTTATCAGGAGG 12642294
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| ||||| ||||| || | | || | ||||| || ||| ||
Sbjct 12642295 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATTGTGTCCAAGGGTTCAAC 12642354
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || | || |||||||| |||||||||||
Sbjct 12642355 CTCGAGCGTGATGGTCTTCCCCATGAGGGTTTTTACGAAAATCTGCAT 12642402
>seq111
Length=12081873
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211
||| || ||||| || || || | ||| | || || ||||| || |||||||| ||
Sbjct 6050871 AATGCCACCACGGAGATGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 6050812
Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271
| ||||| ||| || |||| ||| || || | ||||||||||| ||||| ||
Sbjct 6050811 TGAGAGTGTACGGCCATCCTCTAGTTATTTGCCCGCAAATATGAGACGCTGCTGGTCAGG 6050752
Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331
||| ||||| || ||||| || || ||| | | | | |||||| ||| ||
Sbjct 6050751 AGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTTGATGGTGTCACTGGGCTC 6050692
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||| || || | || ||||| ||||| || || ||||| ||||||||
Sbjct 6050691 GACCTCAGGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6050641
>seq296
Length=2855797
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/228 (68%), Gaps = 5/228 (2%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | || | || || || ||||| |||||||| ||
Sbjct 102880 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 102939
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || || |||||| |||||||| ||||| |||| | || || || ||| |
Sbjct 102940 CAAGGTCCGCCCATCTTCCAGTTGTTT-CCAGCAAAGAT----CTTTGCTGATCAGGAAG 102994
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| || || |||| || | | ||||| ||||| | || ||| ||
Sbjct 102995 AATTCCTTCCTTATCCTGGATCTGGGCCTTGACATTCTCAACTGTGTCTGAGGGTTCAAC 103054
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || | || || ||||||||||||||||||||
Sbjct 103055 CTCGAGCGTGATGGTCTTCTCTGTGAGGGTTTTTACAAAAATCTGCAT 103102
>seq254
Length=4162030
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| ||||||||||| | || | || | || || || |||||||| ||
Sbjct 3417010 ACCACCACGAAGTCTCAAAACAAGGTGAAGAGTGAACTCCTTCTGGATGTTGTAGTCAGA 3417069
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || || |||||| || || || ||||| ||||||| || || || |||||
Sbjct 3417070 CAGGGTCCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATGAGCTTTTGCTGATCAGGAGG 3417129
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| ||||| ||||| || | | || | ||||| | || ||| ||
Sbjct 3417130 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCTGAGGGTTCAAC 3417189
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || || || ||||||| |||||||||||
Sbjct 3417190 CTCAAGCGTGATGGTCTTCCCCGTGAGGGTTTTTATGAAAATCTGCAT 3417237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420089504438016
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