Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq145 105 6e-18 seq33 105 6e-18 seq71 100 2e-16 seq257 96.9 3e-15 seq179 96.9 3e-15 seq16 93.3 4e-14 seq90 91.5 1e-13 seq376 89.7 4e-13 seq79 89.7 4e-13 seq57 87.8 2e-12 seq111 84.2 2e-11 seq296 82.4 6e-11 seq254 82.4 6e-11 >seq145 Length=8547294 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | || | || || || || || |||||||| || Sbjct 6750823 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTGTGGATGTTGTAGTCAGA 6750882 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| || ||||| ||||| ||||||| | ||| || || ||||| Sbjct 6750883 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 6750942 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| || | | |||| ||||| | || ||| || Sbjct 6750943 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATTGTGTCCGAGGGTTCAAC 6751002 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | | | || || || || || |||||||||||||||||||| Sbjct 6751003 CTCGAGCATGATGGTCTTCCCCGTGAGGGTTTTTACAAAAATCTGCAT 6751050 >seq33 Length=21904142 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || || || |||||||| || Sbjct 10626731 ACCACCACGAAGTCTCAATACAAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 10626790 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| || ||||| ||||| ||||||| | ||| || || ||||| Sbjct 10626791 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 10626850 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| || | | || | ||||| | || ||| || Sbjct 10626851 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAAC 10626910 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || |||||||| ||||||||||| Sbjct 10626911 CTCGAGCGTGATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 10626958 >seq71 Length=16036057 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | || | || || || || || |||||||| || Sbjct 9284272 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 9284331 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| || ||||| ||||| ||||||| | ||| || || ||||| Sbjct 9284332 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 9284391 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| || | | || | ||||| | || ||| || Sbjct 9284392 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAAC 9284451 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || |||||||| ||||||||||| Sbjct 9284452 CTCGAGCGTGATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 9284499 >seq257 Length=4087618 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | || | || || || || || |||||||| || Sbjct 3395636 ACCACCATGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 3395577 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| || ||||| ||||| ||||||| | ||| || || ||||| Sbjct 3395576 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 3395517 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| || | | || | ||||| | || ||| || Sbjct 3395516 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCCGAGGGTTCAAC 3395457 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || |||||||| ||||||||||| Sbjct 3395456 CTCGAGCGTGATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 3395409 >seq179 Length=6907437 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | || | || || || || | |||||||| || Sbjct 5669988 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTCAGGATGTTGTAGTCAGA 5669929 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| || ||||| ||||| ||||||| | ||| || || ||||| Sbjct 5669928 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 5669869 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| || | | || | ||||| | || ||| || Sbjct 5669868 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAAC 5669809 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || |||||||| ||||||||||| Sbjct 5669808 CTCGAGCGTGATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 5669761 >seq16 Length=30800738 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 114177 AAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGT 114236 |||| || || || ||||| || |||||||| || || || | |||||| || Sbjct 5646763 AAATCCATAGTGGACTCTTTCTGGATGTTGTATTCAGACAGGGTGTGTCCATCTTCCAGC 5646704 Query 114237 TGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATC 114296 ||||||||||| |||| || | ||| ||||| || || |||||||||||| | ||| Sbjct 5646703 TGTTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTGCCTTGGATC 5646644 Query 114297 TTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCG 114356 ||| || | | |||| |||||| | | || | ||| | ||| | ||||||| Sbjct 5646643 TTTGCCTTGACATTCTCAATGGTGTCACTTGGCTCAATGTCAAGGGTGATGATTTTGCCA 5646584 Query 114357 GTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || || ||||| |||||||| Sbjct 5646583 GTCAAGGTCTTCACAAAGATCTGCAT 5646558 >seq90 Length=14078501 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | || | || || || || || |||||||| || Sbjct 1431075 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1431134 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| || ||||| ||||| ||||||| | ||| || || ||||| Sbjct 1431135 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 1431194 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| || | | || | ||||| | || ||| || Sbjct 1431195 AATTCCTTCCTTGTCCTGGATCTTGGCGTTGACATTCTCGATTGTGTCCGAGGGTTCAAC 1431254 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | | | | || || || || || |||||||| ||||||||||| Sbjct 1431255 CTTGAGCATGATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 1431302 >seq376 Length=1842245 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | || | || || || || || |||||||| || Sbjct 549717 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 549776 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| || ||||| ||||| ||||||| | ||| || || ||||| Sbjct 549777 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 549836 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| || | | || | ||||| | || ||| | Sbjct 549837 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAGC 549896 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | | | || || || || || |||||||| ||||||||||| Sbjct 549897 CTCGAGCG--ATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 549942 >seq79 Length=15399603 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | || | || || || | | |||||||| || Sbjct 5413675 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCT---GGATGTTGTAGTCAGA 5413619 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| || ||||| ||||| ||||||| | ||| || || ||||| Sbjct 5413618 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGG 5413559 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| || | | || | ||||| | || ||| || Sbjct 5413558 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAAC 5413499 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || |||||||| ||||||||||| Sbjct 5413498 CTCGAGCGTGATGGTCTTCCCCGTGAGGGTTTTTACGAAAATCTGCAT 5413451 >seq57 Length=17858683 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | || | || || || || || |||||||| || Sbjct 12642175 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 12642234 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| || ||||| ||||| ||||||| | ||| | || ||||| Sbjct 12642235 CAGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTTATCAGGAGG 12642294 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| || | | || | ||||| || ||| || Sbjct 12642295 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATTGTGTCCAAGGGTTCAAC 12642354 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || | || |||||||| ||||||||||| Sbjct 12642355 CTCGAGCGTGATGGTCTTCCCCATGAGGGTTTTTACGAAAATCTGCAT 12642402 >seq111 Length=12081873 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 ||| || ||||| || || || | ||| | || || ||||| || |||||||| || Sbjct 6050871 AATGCCACCACGGAGATGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 6050812 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | ||||| ||| || |||| ||| || || | ||||||||||| ||||| || Sbjct 6050811 TGAGAGTGTACGGCCATCCTCTAGTTATTTGCCCGCAAATATGAGACGCTGCTGGTCAGG 6050752 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||| ||||| || ||||| || || ||| | | | | |||||| ||| || Sbjct 6050751 AGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTTGATGGTGTCACTGGGCTC 6050692 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || | || ||||| ||||| || || ||||| |||||||| Sbjct 6050691 GACCTCAGGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 6050641 >seq296 Length=2855797 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/228 (68%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | || | || || || ||||| |||||||| || Sbjct 102880 ACCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 102939 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| |||||||| ||||| |||| | || || || ||| | Sbjct 102940 CAAGGTCCGCCCATCTTCCAGTTGTTT-CCAGCAAAGAT----CTTTGCTGATCAGGAAG 102994 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || |||| || | | ||||| ||||| | || ||| || Sbjct 102995 AATTCCTTCCTTATCCTGGATCTGGGCCTTGACATTCTCAACTGTGTCTGAGGGTTCAAC 103054 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || | || || |||||||||||||||||||| Sbjct 103055 CTCGAGCGTGATGGTCTTCTCTGTGAGGGTTTTTACAAAAATCTGCAT 103102 >seq254 Length=4162030 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| ||||||||||| | || | || | || || || |||||||| || Sbjct 3417010 ACCACCACGAAGTCTCAAAACAAGGTGAAGAGTGAACTCCTTCTGGATGTTGTAGTCAGA 3417069 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| || || || ||||| ||||||| || || || ||||| Sbjct 3417070 CAGGGTCCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATGAGCTTTTGCTGATCAGGAGG 3417129 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| ||||| ||||| || | | || | ||||| | || ||| || Sbjct 3417130 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCTGAGGGTTCAAC 3417189 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || ||||||| ||||||||||| Sbjct 3417190 CTCAAGCGTGATGGTCTTCCCCGTGAGGGTTTTTATGAAAATCTGCAT 3417237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420089504438016