Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq350 91.5 1e-13 seq266 91.5 1e-13 seq300 89.7 4e-13 seq279 86.0 5e-12 seq115 86.0 5e-12 seq48 86.0 5e-12 seq353 82.4 6e-11 seq271 82.4 6e-11 seq219 82.4 6e-11 seq157 82.4 6e-11 seq98 82.4 6e-11 seq97 82.4 6e-11 seq74 82.4 6e-11 seq29 82.4 6e-11 seq24 82.4 6e-11 seq1 82.4 6e-11 >seq350 Length=2027970 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/226 (70%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAAT-TGTCG 33968 || |||||||||||||| || ||| ||| ||||| |||||||| |||| | | | | | Sbjct 893844 AGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTATGG 893785 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| || | ||| ||||| ||||||||||| |||||||| || || | || ||| Sbjct 893784 C-CGTCCTCTAGTTGTTTGCCTGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTC 893726 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTC---ACACTATCAGTAGATTCGCATTCGAC 34085 |||| | | || | |||| || | || | | ||| | | ||| || | Sbjct 893725 CTTGT-CTTGGATTATGGCTT--TGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAG 893669 Query 34086 CGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 ||| || || || || || || || ||||||||||| ||||||||| Sbjct 893668 CGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTT 893623 >seq266 Length=3591710 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/225 (69%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||||||| || ||| ||| ||||| |||||||| |||| | | || Sbjct 2217962 AGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGG 2217903 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||| ||||| ||||||||| | |||||||| || || | || ||| Sbjct 2217902 CCATCCTCTAGTTGTTTGCCTGCAAATATCCGACGCTGCTGGTCAGGAGGGATGCCCTCC 2217843 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC---ACACTATCAGTAGATTCGCATTCGACC 34086 ||||| |||||| |||| || | || | || ||| | | ||| || | Sbjct 2217842 TTGTCTTGGATTTTTGGCTT--TGACATTCTCGATGCTGTCACTGGGCTCGACCTCAAGA 2217785 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || || || || || || ||||||||||| ||||| ||| Sbjct 2217784 GTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATCTTT 2217740 >seq300 Length=2956037 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||||||| || ||| ||| || || |||||||| |||| | | || Sbjct 1654704 AGACGCAGCACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGTGTACGG 1654763 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||| ||||| ||||||||||| |||||||| || || | || ||| Sbjct 1654764 CCATCCTCTAGTTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 1654823 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||| ||| | |||| |||| | ||| | | ||| | | ||| || | || Sbjct 1654824 TTGT-CATGAATTTTGGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGT 1654882 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || || || || || ||||||||||| ||||| ||| Sbjct 1654883 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATCTTT 1654925 >seq279 Length=3484820 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||||||| || ||| |||| ||||| |||||||| |||| | | || Sbjct 412 AGACGCAGCACCAGATGCAGGGTGGTCTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGG 353 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||| ||||| ||||||||||| |||||||| || || | || ||| Sbjct 352 CCATCCTCTAGTTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 293 Query 34030 TTGTC 34034 ||||| Sbjct 292 TTGTC 288 >seq115 Length=11006431 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/221 (70%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 33915 CAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTCGT 33973 |||||||||||| || |||| ||| ||||| |||||||| |||| || ||| || | | Sbjct 5374735 CAGCACCAGATGCAGGGTGCACTCTTTCTGGATGTTGTAGTCTGA-AAGTGTACGGCCAT 5374677 Query 33974 CGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGT 34033 | || | ||| ||||| ||||||||||| |||||||| || || | || ||| |||| Sbjct 5374676 CCTCTAGTTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGT 5374617 Query 34034 CCATAATTTTTTGCTTAATGGAACTC---ACACTATCAGTAGATTCGCATTCGACCGTTA 34090 | | |||| |||| || | || | | ||| | | ||| || | || | Sbjct 5374616 -CTTGGATTTTGGCTT--TGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGA 5374560 Query 34091 TTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 | || || || || || || ||||||||||| ||||| ||| Sbjct 5374559 TGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATCTTT 5374519 >seq48 Length=18110590 Score = 86.0 bits (94), Expect = 5e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTC-G 33968 || |||||||||||||| || |||| ||| ||||| |||||||| |||| || ||| | Sbjct 4519521 AGACGCAGCACCAGATGCAGGGTGCACTCTTTCTGGATGTTGTAGTCTGAGAA-CGTCTG 4519579 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || || | || ||||| ||||||||||| |||||||| || || |||| ||| Sbjct 4519580 GCCATCCTCTAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGAGGGACGCCCTC 4519639 Query 34029 TTTGTC 34034 ||||| Sbjct 4519640 CTTGTC 4519645 >seq353 Length=2119611 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||||||||||| || ||| ||| ||||| |||||||| |||| | | || Sbjct 756066 AGACGCAGCACCAGATACAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGG 756007 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||| ||||| ||||||||||| |||||||| || || | || ||| Sbjct 756006 CCATCCTCTAGTTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 755947 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTA---TCAGTAGATTCGCATTCGACC 34086 ||||| ||||| |||| || | || || | ||| | | ||| || | Sbjct 755946 TTGTCTTGGATTTTG-GCTT--TGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGA 755890 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || || || || || || ||||||||||| ||||| ||| Sbjct 755889 GTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATCTTT 755845 >seq271 Length=3743906 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||||||| || ||| ||| ||||| |||||||| |||| | | || Sbjct 1490766 AGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGG 1490825 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||| ||||| ||||||||||| |||||||| || || | || ||| Sbjct 1490826 CCATCCTCTAGTTGTTTGCCTGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 1490885 Query 34030 TTGTC 34034 ||||| Sbjct 1490886 TTGTC 1490890 >seq219 Length=5245935 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||||||| || ||| ||| ||||| |||||||| |||| | | || Sbjct 4565244 AGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGG 4565185 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||| ||||| ||||||||||| |||||||| || || | || ||| Sbjct 4565184 CCATCCTCTAGTTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 4565125 Query 34030 TTGTC 34034 ||||| Sbjct 4565124 TTGTC 4565120 >seq157 Length=8200175 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||||||| || ||| ||| ||||| |||||||| |||| | | || Sbjct 2939624 AGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGG 2939683 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||| ||||| ||||||||||| |||| ||| || || | |||||| Sbjct 2939684 CCATCCTCTAGTTGTTTGCCCGCAAATATCAGACGCTTCTGGTCAGGAGGGATGCTCTCC 2939743 Query 34030 TTGTC 34034 ||||| Sbjct 2939744 TTGTC 2939748 >seq98 Length=13236748 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||||||| || ||| ||| ||||| |||||||| |||| | | || Sbjct 3382720 AGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTACTCTGAGAGTGTACGG 3382779 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||| ||||| ||||||||||| |||||||| || || | || ||| Sbjct 3382780 CCATCCTCTAGTTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 3382839 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC---ACACTATCAGTAGATTCGCATTCGACC 34086 |||| | | |||| |||| || | || | | ||| | | ||| || | Sbjct 3382840 TTGT-CTTGGATTTTGGCTT--TGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGA 3382896 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || || || || || || ||||||||||| ||||| ||| Sbjct 3382897 GTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATCTTT 3382941 >seq97 Length=13319445 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||||||| || ||| ||| ||||| |||||||| |||| | | || Sbjct 13186582 AGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGG 13186641 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||| ||||| ||||||||||| |||||||| || || | || ||| Sbjct 13186642 CCATCCTCTAGTTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 13186701 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC---ACACTATCAGTAGATTCGCATTCGACC 34086 |||| | | |||| |||| || | || | | ||| | | ||| || | Sbjct 13186702 TTGT-CTTGGATTTTGGCTT--TGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGA 13186758 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || || || || || || ||||||||||| ||||| ||| Sbjct 13186759 GTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATCTTT 13186803 >seq74 Length=15914887 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||||||| || ||| ||| ||||| |||||||| |||| | | || Sbjct 4616498 AGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGG 4616439 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||| ||||| ||||||||||| |||||||| || || | || ||| Sbjct 4616438 CCATCCTCTAGTTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 4616379 Query 34030 TTGTC 34034 ||||| Sbjct 4616378 TTGTC 4616374 >seq29 Length=23282948 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||||||| || ||| ||| ||||| |||||||| |||| | | || Sbjct 10737790 AGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGG 10737849 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||| ||||| ||||||||||| |||||||| || || | || ||| Sbjct 10737850 CCATCCTCTAGTTGTTTGCCTGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 10737909 Query 34030 TTGTC 34034 ||||| Sbjct 10737910 TTGTC 10737914 >seq24 Length=25018996 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||||||| || ||| ||| ||||| |||||||| |||| | | || Sbjct 5273521 AGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGG 5273580 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||| ||||| ||||||||||| |||||||| || || | || ||| Sbjct 5273581 CCATCCTCTAGTTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 5273640 Query 34030 TTGTC 34034 ||||| Sbjct 5273641 TTGTC 5273645 >seq1 Length=49259779 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||||||| || ||| ||| ||||| |||||||| |||| | | || Sbjct 8358083 AGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGG 8358142 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||| ||||| ||||||||||| |||||||| || || | || ||| Sbjct 8358143 CCATCCTCTAGTTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCC 8358202 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC---ACACTATCAGTAGATTCGCATTCGACC 34086 |||| | | |||| |||| || | || | | ||| | | ||| || | Sbjct 8358203 TTGT-CTTGGATTTTGGCTT--TGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGA 8358259 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || || || || || || ||||||||||| ||||| ||| Sbjct 8358260 GTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATCTTT 8358304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397019969911936