Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq516 91.5 1e-13 seq126 91.5 1e-13 seq48 82.4 5e-11 >seq516 Length=578746 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 ||| ||||| || | ||| || |||||||| || |||| | || | || |||| | Sbjct 124260 ATGTAGGGTGGACTATTTCTGCATGTTGTAGTC--TGAGGGTGTACGGCCATCCTCTAGT 124203 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||| ||||| ||||||||||||| ||||| || || || |||||||| ||| Sbjct 124202 TGTTTTCCAGCAAATATCAAACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATT 124143 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| ||| ||| | | || || || || || || || | || ||||| || || Sbjct 124142 TTGGCTTTGACATTCTTGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCA 124083 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 ||||| || | ||||| || |||||||||| Sbjct 124082 GTCAGGGTCTCCACAAAGATCTGCATATTTG 124052 >seq126 Length=9672431 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 ||| ||||| || ||||| || |||||||| || ||||| | || | || |||| Sbjct 5918417 ATGCAGGGTGGACTCTTTCTGGATGTTGTAGTC--TGAGAGTGTACGGCCATCCTCTAGC 5918360 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||||||||| |||||| |||||| ||||| | || || |||||||| ||| Sbjct 5918359 TGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGAAGGATGCCCTCCTTGTCTTGGATT 5918300 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| ||| ||| | || || ||||| || || || || | || ||||| | | Sbjct 5918299 TTGGCTTTGACATTCTCGATGGTATCACTGGGCTCGACCTCAAGAGTGATGGTCCTGGCA 5918240 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 ||||| || || ||||| || ||||| |||| Sbjct 5918239 GTCAGGGTCTTCACAAAGATCTGCATCTTTG 5918209 >seq48 Length=18110590 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAAT-TCTCGCG-TCTTCTAAT 15030 ||| ||||| | ||||| || |||||||| || |||||| ||| || || |||| Sbjct 4519535 ATGCAGGGTGCACTCTTTCTGGATGTTGTAGTC--TGAGAACGTCTGGCCATCCTCTAGC 4519592 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||||||||| |||||| |||||| ||||| || | || |||||||| ||| Sbjct 4519593 TGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGAGGGACGCCCTCCTTGTCTTGGATT 4519652 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| ||| ||| | || || || || || || || || | || ||||| || || Sbjct 4519653 TTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCA 4519712 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 |||| | || |||| || ||||| |||| Sbjct 4519713 TTCAGGTTCTTCCCAAAGATCTGCATCTTTG 4519743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357353809090880