Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq40 300 2e-76 seq184 248 1e-60 seq272 143 4e-29 seq92 109 8e-19 >seq40 Length=21071559 Score = 300 bits (332), Expect = 2e-76 Identities = 451/639 (71%), Gaps = 4/639 (1%) Strand=Plus/Minus Query 9415 TTTCTACCACCACTAATCCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGG-- 9472 ||||| |||||| || || || |||||||| | ||||| | |||||| || |||| Sbjct 16839836 TTTCTGCCACCAGCAACCCTGCCAGCAATCTGCTTGGTGAATGCTTCAACAAAGTGGGTC 16839777 Query 9473 -CTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTC 9531 |||| || |||| | || | || |||||||| || || |||| ||| | |||| Sbjct 16839776 ACTAT-CCATGCTCCAGCAGTACAGAGTTGTTGTAGACAAACTGTTGGTAGTCGTACTCT 16839718 Query 9532 GCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAAC 9591 || || |||| ||||||| |||| |||||| ||||||| | || ||| Sbjct 16839717 TGGTTATTAATCTGAAAGGTGTCAGGCAGGAGAGGGTGCCAGTGGTAGAGAGAGTTAAAC 16839658 Query 9592 TCGGCCGCTATTCGGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAG 9651 ||||| || || | ||| |||| ||| || | | ||| || | ||| |||||||| Sbjct 16839657 TCGGCAGCAATGCAGTTTTGGTCCTGGAAATCTTGATTGAAAAGCAGCTCTGGGTCAAAC 16839598 Query 9652 ATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATG 9711 | || | || || || || ||||| ||||| ||||| | | ||| | ||| ||||| Sbjct 16839597 TTCAGTTTAAAATGATAGCCACTGAGGTGCTGCACATAGTCTTCGATCACAATATTAATA 16839538 Query 9712 GTTTCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGG 9771 | || || | | ||||| | | || || |||| |||||| ||| || || | ||| Sbjct 16839537 ATCTCTCCTATGAGAATTAGCCTGCTTGTCTGGAACAGCTGCTCATCATCCTATCCGGGG 16839478 Query 9772 TGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTAC 9831 || || | ||| || ||||| || || | ||| ||||| || ||||| ||||||| ||| Sbjct 16839477 TGCTCCTCTTTAAGCACATCACACACTCGGTTATGTTCGCTAAGCCAATTGGTGGCATAC 16839418 Query 9832 ATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCG 9891 ||||||| ||||||||| | |||||| || | | |||||| |||||||| | | || Sbjct 16839417 ATCATTAGACCCGGCACCAGACCAAAGACCTGTTGCCCCACCGCAAAGCGAACGTGCTCT 16839358 Query 9892 GGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATT 9951 || || | || | |||| ||| | ||||| ||||| ||||| ||||| |||||||| Sbjct 16839357 GGTACGTTTGGAGGGTACATCATGTCTACCTGAGTCTCCTTGACTGTGGGAGGATACATC 16839298 Query 9952 TCACCGTCAATAACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGC 10011 || || |||| | |||||| |||| || ||||||||||| || |||| |||||||| Sbjct 16839297 TCTCCATCAACCATCTGATATTTCAGTTTTCCATCCTTGAAAAGGTGCAGTTTATGCTGT 16839238 Query 10012 TTCTCCAACGTTTCGCCGTAGATGTGACTGAGATCGACC 10050 | |||| ||||| || || || ||||| | ||| ||| Sbjct 16839237 CTGTCCAGAGTTTCACCATAAATATGACTTAAATCCACC 16839199 Score = 145 bits (160), Expect = 1e-29 Identities = 202/282 (72%), Gaps = 1/282 (0%) Strand=Plus/Minus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 || || || |||||||| || ||||| |||||||| | || || || ||||| | Sbjct 16840248 GGGCAGCCTTTCACATTATTGCAGATGAGAGACTGAATCGAGGCTGTGTTGACGATTTTA 16840189 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 ||||| || || || || || ||||| || ||||| || | || || || || || Sbjct 16840188 AAACCCACTTCTCCACCAAACGTGCTAGGCTTCCAATAGGTAGGAGAACATATAGTATTA 16840129 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGC-CCCCAGCTCGATGATGCTCTCACCGAAGAT 9072 |||| || |||||||||||||| || || || || || | ||| ||||||| ||||| Sbjct 16840128 CCCATCAGTCCTTTCAAGGAAAATGGTGCGGCCTAGTTCTACCATGGTCTCACCAAAGAT 16840069 Query 9073 GGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTC 9132 || | | ||||| || ||||| || | | ||| | || || || | ||| || | ||| Sbjct 16840068 GGAATCTGGACGAGGCTTTTCTACCAGCAGGCCGGGATACAGCTCCATAGCTTCAATGTC 16840009 Query 9133 GCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 16840008 ACCATAGAGAGCTTCTAACTCTGCAGCCATTTCCTTTTCTCC 16839967 Score = 102 bits (112), Expect = 1e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 10125 ACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAAAAT 10184 |||||||| |||| |||| | || ||||| || |||| | | ||| ||| | ||| | Sbjct 16839201 ACCCCATGGCCCAGTCCTTTGGTAAAAGCTGGCCCTCACTTAAAATCTGTCTTGAAATAC 16839142 Query 10185 TGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCGGGG 10244 || || ||||||||||| | || || | ||||||| || |||||||| ||||| || Sbjct 16839141 TGATGAGTAAAGTGTTGGGCAAAGAACGTAAACATCATATTTGTGCCCTGAGGATCAAGG 16839082 Query 10245 ATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACGCGCC 10304 || || | || | | || |||||| ||||||| || | ||||||| || || || | Sbjct 16839081 ATGAACTTTCTTCTCAAAAGAACTTTTTCCACAACCTCTTTTGAATCAGGGAGCTGCTGC 16839022 Query 10305 TTACCT 10310 || ||| Sbjct 16839021 TTCCCT 16839016 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 10390 CCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATAA 10449 ||||| || || | ||| |||||||||||| |||| || ||||| || | ||| || ||| Sbjct 16839018 CCTTTTACACCCATAGGGGTAGGGCAGTCATGAGGCACTGGAGGAAGGGCTCTGGTGTAA 16838959 Query 10450 TAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATC 10493 ||||| | ||| ||||| || |||||||| ||||||||||| || Sbjct 16838958 TAGGAGACATTGGAAAAGGCCTCCCAGCTTTTGTAGCCATAGTC 16838915 >seq184 Length=6332433 Score = 248 bits (274), Expect = 1e-60 Identities = 435/636 (68%), Gaps = 17/636 (3%) Strand=Plus/Plus Query 9415 TTTCTACCACCACTAATCCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCT 9474 ||||| |||||| || || ||| |||||||| | ||||| | |||||| || |||| Sbjct 2433415 TTTCTGCCACCAGCAACCCTACCAGCAATCTGCTTGGTGAATGCTTCAACAAAGTGGGTC 2433474 Query 9475 ATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCG 9534 | ||| |||| | || | || |||||||| || || |||| ||| |||| | Sbjct 2433475 ACTCCATGCTCCAGCAGTACAGAGTTGTTGTAGACAAACTGTTGGTAGTTGTACTCTTGG 2433534 Query 9535 TCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCG 9594 | || |||| ||||||| |||| |||||| ||||||| || || |||||| Sbjct 2433535 TTATTAATCTGAAAGGTGTCAGGCAGGAGAGGGTGCCAGTGGTAGAGAGTGTTAAACTCG 2433594 Query 9595 GCCGCTATTCGGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATT 9654 || | || | ||| |||||||| || | | ||| || | ||| |||||||| | Sbjct 2433595 GCAGTGATGCAGTTTTGGTACTGGAACTCTTGATTGAAAAGCAGCTCTGGGTCAAACTTC 2433654 Query 9655 AGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTT 9714 || | || || || || ||||| ||||| ||||| | | |||| | ||| ||||| || Sbjct 2433655 AGTTTAAAATGATAGCCACTGAGGTGCTGCACATAGTCTTTGATCACAATCTTAATAGTC 2433714 Query 9715 TCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGT 9774 || | | | ||||| | | || || |||| | ||| || |||||| || ||| Sbjct 2433715 TCTTCTATGAGAATTAGCCTGCTTGTCTGGAACAGTTTCTCATCGTCCCATTTGGGATGT 2433774 Query 9775 TCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATC 9834 || | ||| || ||||| | || | ||| |||| | ||||| |||| ||| |||||| Sbjct 2433775 TCCTCTTTAAGCACATCACGCACTCGGTTAAGTTCACAAAGCCAAATGGCGGCATACATC 2433834 Query 9835 ATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGC 9894 |||| ||| ||| | | |||||| || || | |||||| |||||||| | || ||| Sbjct 2433835 ATTAGACCTGGCGCCAGACCAAAGACCTCTTGCCCCACAGCAAAGCGAA----ATAGGG- 2433889 Query 9895 ACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCA 9954 || | ||| | |||| ||||| ||||| ||||| | |||||| || Sbjct 2433890 ------------TAGATCATGTCTGCCTGAGTCTCCTTGACTGTGGGAGTATACATCTCT 2433937 Query 9955 CCGTCAATAACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTC 10014 || ||||| | |||||| |||| || ||||||||||| || | ||| |||||||| | Sbjct 2433938 CCATCAATCATCTGATATTTCAGTTTTCCATCCTTGAAAAGGCACAGTTTATGCTGTCTG 2433997 Query 10015 TCCAACGTTTCGCCGTAGATGTGACTGAGATCGACC 10050 | || ||||| || || || ||| | | ||| ||| Sbjct 2433998 TGCAGAGTTTCACCATAAATATGATTTAAATCCACC 2434033 Score = 100 bits (110), Expect = 4e-16 Identities = 189/278 (68%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 || || || |||||||| || ||||| |||||||| | || || || ||||| | Sbjct 2433004 GGGCAGCCTTTCACATTATTGCAGATGAGAGACTGAATCGAGGCTGTGTTGACGATTTTA 2433063 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 ||||| || || || || || ||||| | ||||| || | || || || | | || Sbjct 2433064 AAACCCACTTCTCCACCAAATGTGCTATGCTTCCAATAGGTAGGAGAACATGTAAGATTA 2433123 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| || ||||||||||||| || || || || | ||| ||||||| ||| || Sbjct 2433124 CCCATCAGTTCTTTCAAGGAAAATGGCATTCCTAGTTCTACCATGGTCTCACCAAAGCTG 2433183 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 | | | ||| | | ||||| || | | | | || || || | ||| || | ||| Sbjct 2433184 GAATCTGGAAGAGTCTTTTCTACCAGCAGGGTGGGATACAGCTCCATAGCTTCAATGTCA 2433243 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || ||||| || || ||||| ||||| || ||||| || Sbjct 2433244 CCGTAGAGAGCCTCTAACTCTGCAGCCATTTCCTTTTC 2433281 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 10390 CCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATAA 10449 ||||| || || | ||| |||||||||||| |||| || ||||| || | ||| || ||| Sbjct 2434182 CCTTTTACACCCATAGGGGTAGGGCAGTCATGAGGCACTGGAGGAAGGGCTCTGGTGTAA 2434241 Query 10450 TAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATC 10493 ||||| || || |||| || |||||||| ||||||||||| || Sbjct 2434242 TAGGAGAGGTTGGAAAGGGCCTCCCAGCTTTTGTAGCCATAGTC 2434285 >seq272 Length=3690327 Score = 143 bits (158), Expect = 4e-29 Identities = 203/284 (71%), Gaps = 1/284 (0%) Strand=Plus/Plus Query 8892 ACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGT 8951 |||| || || ||| |||| || ||||| | ||||| | || || || ||||| | Sbjct 2345703 ACGGGCAGCCTTTCGCATTATTGCAGATGAGAGTCTGAAGCGAGGCTGTGTTGACGATTT 2345762 Query 8952 CTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGT 9011 ||||| || | || || || ||||| || ||||| || || || || || || || | Sbjct 2345763 TAAAACCCACTTTTCCACCAAACGTGCTAGGCTTCCAATAGGCAGGAGAACATATAACAT 2345822 Query 9012 TCGCCATGAG-CCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 | |||| || ||| ||||||||||| || || || || || | ||| |||| || ||| Sbjct 2345823 TACCCATCAGTCCCATTCAAGGAAAATGGTGCGCCTAGTTCTACCATGGTCTCCCCAAAG 2345882 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | ||||| || ||||| || | | ||| | || || || | ||| || | | Sbjct 2345883 ATGGCATCTGGACGAGGCTTTTCTACCAGCAGGCCGGGATACAGCTCCATAGCTTCAATG 2345942 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 2345943 TCACCATAGAGAGCTTCTAACTCTGCAGCCATTTCCTTTTCGCC 2345986 >seq92 Length=13624840 Score = 109 bits (120), Expect = 8e-19 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8932 GGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTA 8991 ||| || || || || |||| ||||||| || || || || || || ||||||||||| Sbjct 513797 GGTGGCAGTCTTGACAATGTTGAAACCTATCTCACCACCAAATGTACTAGGTTTCCAGTA 513856 Query 8992 CGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTC 9051 | |||| || |||||| ||| | | ||| || || | |||||| |||||||| | || Sbjct 513857 CTCCGGAGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAAATTC 513916 Query 9052 GATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGT 9110 || || || || || ||||||| ||| | ||| || | || | || || | || Sbjct 513917 AATCATACTTTCCCCAAAGATGGAGTTTGGAAGGCATTTCTC-AAGAAGCAGCCCCGGGT 513975 Query 9111 AGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCT 9170 ||| || | ||| || | || ||||| || ||||||| || || || |||||||| | Sbjct 513976 AGAACTCCATAGCATCAATATCACCATATAGCTCTTCCAATTCAGCCGCCATCTCCTTGT 514035 Query 9171 CACCTACAA 9179 | |||| || Sbjct 514036 CTCCTATAA 514044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723648679411200