Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq21 95.1 1e-14 >seq21 Length=27434213 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/229 (69%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || || ||||| | || |||| ||||| || || ||||| || |||||||| | | Sbjct 23822059 CAGAGATTTGGGGTGCCCCTGGGCTATGGGGGACCCCATGCAGCCTTCTTTGCTGTCAGA 23822000 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGAT---AGTGAA 153884 || || | | ||| ||| ||||| ||||| || || | | |||| |||| Sbjct 23821999 GAAAACTTGGTGCGAATGATGCCTGGAAGAATGGTTGGGGTGACGAGAGATGCCAGTG-- 23821942 Query 153885 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAA 153944 | || ||| || | | || || || || || || ||||| ||| |||||||||| Sbjct 23821941 -GGAAAGAAGTGTATCGCCTCGCTCTTCAAACCAGGGATCAGCACATCCGGAGAGACAAG 23821883 Query 153945 GCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTG 153993 || ||||| |||||||||||||| ||||| || |||| |||||| ||| Sbjct 23821882 GCCACCAGCAACATCTGCACAGCGCAGGCCCTTTTGGCAAATATGGCTG 23821834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579149318277120