Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq94 212 7e-50 seq223 123 3e-23 seq44 93.3 5e-14 seq8 86.0 7e-12 >seq94 Length=13213440 Score = 212 bits (234), Expect = 7e-50 Identities = 413/604 (68%), Gaps = 11/604 (2%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 || ||||| |||| || ||||| ||||| |||| || || ||||| || | | | Sbjct 4997810 AGGTGTTTGAACAGCAGGTGAGCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGT 4997869 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 ||| | |||||||| | ||||||| |||| ||| ||| || | ||||||||| || ||| Sbjct 4997870 TCACTGGAAAATGTGAGGCCAGGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCA 4997929 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || || | || |||| | ||||| ||||||||||| || || | || ||||| || Sbjct 4997930 AAAGAACTGGAGAAGATT---CCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTAG 4997986 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 || || || || | ||| || ||||| || || ||| |||||||| ||| Sbjct 4997987 GTAATTTCTTTGTTCCCAGCCCAACGCAAGGCCCAGTCTGCTGCCTTCTTTACACAGGGC 4998046 Query 19183 ATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCT 19242 ||||| || || | ||| | ||| | | || | | ||||||| ||| || Sbjct 4998047 ATTGTTTCAATGGCATTGATGAGAAATTCCCATTCCTTAGGATCTTTA----ATGTGTCA 4998102 Query 19243 ATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302 || | | ||| |||||||| ||||| || ||||| || || || || || || || ||| Sbjct 4998103 ATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 4998162 Query 19303 CATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACT 19362 || | |||||||| ||||| ||||| | ||| | || |||| |||||||| ||| Sbjct 4998163 CAGCGGGCTTCTGTAATCTGGACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACT 4998222 Query 19363 ATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAG 19422 | |||||||| || ||||| || || | ||||| ||||| | | || || || Sbjct 4998223 GTGCCATCACTTGCAGCAAAGAAGGCCAGAACATGGGATATAAAGTAACTCTCCTCAGA- 4998281 Query 19423 GTTAATGTATT-CCAATCATTAATATCTTTAGATAAATCTA-CTTCTTCAACTGTCCAAA 19480 |||| | || ||| | | ||| ||||| || | ||| | || ||| | | |||| Sbjct 4998282 CTTAAGGGCTTCCCAGTGCTAAATGTCTTTGGAAAGATCAATCTCCTTGGTGT-TTCAAA 4998340 Query 19481 AAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAA 19540 | ||||||| ||||| ||| |||| | ||| || ||| | |||| | |||||| | | Sbjct 4998341 AGGAAGCCTGAGCTTTCTTAGACATCTGCCAAATGTCATGGTATTCAACAGGAAAAACGA 4998400 Query 19541 CAAA 19544 |||| Sbjct 4998401 CAAA 4998404 >seq223 Length=5023716 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| ||||| || | |||||||||||||||| ||| | Sbjct 3965826 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 3965767 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||||||||| | Sbjct 3965766 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGG 3965707 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 3965706 CTACAACACGTTCTCC 3965691 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || || ||||||| | |||||||||||| || || | ||| |||||||| Sbjct 3966817 TTAGAAGTCCGCATCCAAGGTGAAAGAATTCTCTG--TTGGACTCGACATCACTCCCATC 3966760 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||| ||| | || | || |||||||| ||||| || || || | ||| ||| Sbjct 3966759 TTCTGATACTCGCCTACGCGCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 3966700 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||||||||| ||||||| ||| Sbjct 3966699 TCCATAAAATCAAACGGATTTTCTAC 3966674 >seq44 Length=20396770 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 |||||||| || || | |||| || | || || || || ||||| | ||| ||||| Sbjct 12601431 TGAAATTCCCCTGACAAGACTCGGCGAGTGTAGATGTTGCTGGTATAAGCTTCAATAGAC 12601490 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| |||| || ||||||||||| || |||||||| | |||| | ||| || Sbjct 12601491 TCATTATTCCCAAGTATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 12601550 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 12601551 TTTCTTACACCATA 12601564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||||||||||||||| | ||| ||| |||| || | ||| || || | Sbjct 12594163 TCCAGCCGTAGAAATGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 12594222 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| || || ||||| || || || ||||| ||||||||||| | | | Sbjct 12594223 TCAGAGACTGGCTTTGATCTATGAAAGCCCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 12594282 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 |||| | || ||||| || || ||||||| || || | ||| || || Sbjct 12594283 TTTGAGAAATTTCCCACACCGTCTTATAAAGCTGCTTCAAGTCATCGGG 12594331 Score = 82.4 bits (90), Expect = 9e-11 Identities = 145/216 (67%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 |||| | || | ||||| || | ||| |||| ||||| || ||||| ||||| Sbjct 12613370 TCCTCTGCTGACTGGAGAGCCTTCATAGGTTTCGTAAGGGCCAAGCTCCTTAGCCAGTTC 12613429 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659 |||||| |||||||| || | |||||| || ||||||||||||| | | || || | Sbjct 12613430 ACAACTGGCTTCCAAAGCTCCATAATAAATGGTTTCAAATATTTGTTTATTCAGTAACTG 12613489 Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719 || |||| ||||||||||| || | |||||| | ||||| || Sbjct 12613490 GGCCTCTGGACTCTCAAAAGGATATCTCATCAGGATGAAAGCATCTGCTAGACCTTGGAC 12613549 Query 47720 ACCAATACCAATTGGTCTATGAGTTTTATTAGAAAA 47755 ||||| ||||| || | ||| |||||| || || Sbjct 12613550 CCCAATTCCAATGGGACGATGGCGTTTATTTGATAA 12613585 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| |||||| ||||||| ||||| || | | || Sbjct 12623880 GTCCCAGCATTGAAGAGGGTAGGAGAAGCATGAGTAAACCACTTCTCAGACAGAAGGTTG 12623939 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 |||||||||||| ||| ||| ||||| || || || || | |||||| | ||| | | Sbjct 12623940 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCGACAGATACCCTCATCAGC 12623999 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| || ||||||||| Sbjct 12624000 ATATGCTGTGGTCTTTCA 12624017 >seq8 Length=38200284 Score = 86.0 bits (94), Expect = 7e-12 Identities = 108/144 (75%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 19332 ACAAAA-TCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTA 19390 |||||| |||| |||||||||||||| || ||||||||||| ||||||||||| |||| Sbjct 15304822 ACAAAAGTCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTA 15304878 Query 19391 ATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA-TGTATTCCAATCATTAATATCT 19449 | | || ||||||| || ||||||| | |||| | ||||| | | | ||| Sbjct 15304879 AGATGTGAGAGATAAAATACTTCTCATCTG-GTTTAAGCCTGTTCCAGTGAGGGAAATCA 15304937 Query 19450 TTAGATAAATCTACTTCTTCAACT 19473 || ||||| || || ||||| ||| Sbjct 15304938 TTTGATAAGTCAACCTCTTCCACT 15304961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562047192875520