Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10]
8,768 sequences; 3,843,982,861 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq94 212 7e-50
seq223 123 3e-23
seq44 93.3 5e-14
seq8 86.0 7e-12
>seq94
Length=13213440
Score = 212 bits (234), Expect = 7e-50
Identities = 413/604 (68%), Gaps = 11/604 (2%)
Strand=Plus/Plus
Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002
|| ||||| |||| || ||||| ||||| |||| || || ||||| || | | |
Sbjct 4997810 AGGTGTTTGAACAGCAGGTGAGCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGT 4997869
Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062
||| | |||||||| | ||||||| |||| ||| ||| || | ||||||||| || |||
Sbjct 4997870 TCACTGGAAAATGTGAGGCCAGGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCA 4997929
Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122
|| || | || |||| | ||||| ||||||||||| || || | || ||||| ||
Sbjct 4997930 AAAGAACTGGAGAAGATT---CCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTAG 4997986
Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182
|| || || || | ||| || ||||| || || ||| |||||||| |||
Sbjct 4997987 GTAATTTCTTTGTTCCCAGCCCAACGCAAGGCCCAGTCTGCTGCCTTCTTTACACAGGGC 4998046
Query 19183 ATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCT 19242
||||| || || | ||| | ||| | | || | | ||||||| ||| ||
Sbjct 4998047 ATTGTTTCAATGGCATTGATGAGAAATTCCCATTCCTTAGGATCTTTA----ATGTGTCA 4998102
Query 19243 ATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302
|| | | ||| |||||||| ||||| || ||||| || || || || || || || |||
Sbjct 4998103 ATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAA 4998162
Query 19303 CATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACT 19362
|| | |||||||| ||||| ||||| | ||| | || |||| |||||||| |||
Sbjct 4998163 CAGCGGGCTTCTGTAATCTGGACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACT 4998222
Query 19363 ATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAG 19422
| |||||||| || ||||| || || | ||||| ||||| | | || || ||
Sbjct 4998223 GTGCCATCACTTGCAGCAAAGAAGGCCAGAACATGGGATATAAAGTAACTCTCCTCAGA- 4998281
Query 19423 GTTAATGTATT-CCAATCATTAATATCTTTAGATAAATCTA-CTTCTTCAACTGTCCAAA 19480
|||| | || ||| | | ||| ||||| || | ||| | || ||| | | ||||
Sbjct 4998282 CTTAAGGGCTTCCCAGTGCTAAATGTCTTTGGAAAGATCAATCTCCTTGGTGT-TTCAAA 4998340
Query 19481 AAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAA 19540
| ||||||| ||||| ||| |||| | ||| || ||| | |||| | |||||| | |
Sbjct 4998341 AGGAAGCCTGAGCTTTCTTAGACATCTGCCAAATGTCATGGTATTCAACAGGAAAAACGA 4998400
Query 19541 CAAA 19544
||||
Sbjct 4998401 CAAA 4998404
>seq223
Length=5023716
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| ||||| || | |||||||||||||||| ||| |
Sbjct 3965826 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 3965767
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||| ||||||||||| |
Sbjct 3965766 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGG 3965707
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 3965706 CTACAACACGTTCTCC 3965691
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/146 (75%), Gaps = 4/146 (3%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || || ||||||| | |||||||||||| || || | ||| ||||||||
Sbjct 3966817 TTAGAAGTCCGCATCCAAGGTGAAAGAATTCTCTG--TTGGACTCGACATCACTCCCATC 3966760
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
|| ||||| ||| | || | || |||||||| ||||| || || || | ||| |||
Sbjct 3966759 TTCTGATACTCGCCTACGCGCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 3966700
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
|||||||||||||| ||||||| |||
Sbjct 3966699 TCCATAAAATCAAACGGATTTTCTAC 3966674
>seq44
Length=20396770
Score = 93.3 bits (102), Expect = 5e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
|||||||| || || | |||| || | || || || || ||||| | ||| |||||
Sbjct 12601431 TGAAATTCCCCTGACAAGACTCGGCGAGTGTAGATGTTGCTGGTATAAGCTTCAATAGAC 12601490
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
|||||||| |||| || ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 12601491 TCATTATTCCCAAGTATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 12601550
Query 47448 TTTCTTACTCCATA 47461
|||||||| |||||
Sbjct 12601551 TTTCTTACACCATA 12601564
Score = 84.2 bits (92), Expect = 2e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || ||||||||||||||||| | ||| ||| |||| || | ||| || || |
Sbjct 12594163 TCCAGCCGTAGAAATGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 12594222
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| ||||| || || ||||| || || || ||||| ||||||||||| | | |
Sbjct 12594223 TCAGAGACTGGCTTTGATCTATGAAAGCCCCTCTCTCAGCTGCCATCTTGAGTACGGTTT 12594282
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
|||| | || ||||| || || ||||||| || || | ||| || ||
Sbjct 12594283 TTTGAGAAATTTCCCACACCGTCTTATAAAGCTGCTTCAAGTCATCGGG 12594331
Score = 82.4 bits (90), Expect = 9e-11
Identities = 145/216 (67%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599
|||| | || | ||||| || | ||| |||| ||||| || ||||| |||||
Sbjct 12613370 TCCTCTGCTGACTGGAGAGCCTTCATAGGTTTCGTAAGGGCCAAGCTCCTTAGCCAGTTC 12613429
Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659
|||||| |||||||| || | |||||| || ||||||||||||| | | || || |
Sbjct 12613430 ACAACTGGCTTCCAAAGCTCCATAATAAATGGTTTCAAATATTTGTTTATTCAGTAACTG 12613489
Query 47660 TGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAAC 47719
|| |||| ||||||||||| || | |||||| | ||||| ||
Sbjct 12613490 GGCCTCTGGACTCTCAAAAGGATATCTCATCAGGATGAAAGCATCTGCTAGACCTTGGAC 12613549
Query 47720 ACCAATACCAATTGGTCTATGAGTTTTATTAGAAAA 47755
||||| ||||| || | ||| |||||| || ||
Sbjct 12613550 CCCAATTCCAATGGGACGATGGCGTTTATTTGATAA 12613585
Score = 82.4 bits (90), Expect = 9e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
|| || | ||| || | || ||||| |||||| ||||||| ||||| || | | ||
Sbjct 12623880 GTCCCAGCATTGAAGAGGGTAGGAGAAGCATGAGTAAACCACTTCTCAGACAGAAGGTTG 12623939
Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719
|||||||||||| ||| ||| ||||| || || || || | |||||| | ||| | |
Sbjct 12623940 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCGACAGATACCCTCATCAGC 12623999
Query 48720 ATATATTGAGGTCTTTCA 48737
|||| || |||||||||
Sbjct 12624000 ATATGCTGTGGTCTTTCA 12624017
>seq8
Length=38200284
Score = 86.0 bits (94), Expect = 7e-12
Identities = 108/144 (75%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 19332 ACAAAA-TCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTA 19390
|||||| |||| |||||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct 15304822 ACAAAAGTCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTA 15304878
Query 19391 ATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA-TGTATTCCAATCATTAATATCT 19449
| | || ||||||| || ||||||| | |||| | ||||| | | | |||
Sbjct 15304879 AGATGTGAGAGATAAAATACTTCTCATCTG-GTTTAAGCCTGTTCCAGTGAGGGAAATCA 15304937
Query 19450 TTAGATAAATCTACTTCTTCAACT 19473
|| ||||| || || ||||| |||
Sbjct 15304938 TTTGATAAGTCAACCTCTTCCACT 15304961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562047192875520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |