Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq168 98.7 1e-15 seq184 89.7 6e-13 >seq168 Length=7563430 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/190 (72%), Gaps = 9/190 (5%) Strand=Plus/Minus Query 2240 ACTGTCTCAGAATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGAGGATCCCAATGA 2299 ||||||| ||||| || ||| |||||||| || ||| ||||| ||| |||| |||| Sbjct 5751398 ACTGTCTGAGAATGAGACCTGTGAGATCCAGATGTTCTGCTCTGTGGAGAATCCAAATGG 5751339 Query 2300 CAACATCTCCTTCAAATGGGAGGCCTTGGGCAAGACGCTTCTACGCGAGCCCAACCTCAC 2359 |||| ||| |||| |||| || ||| |||||| | | || ||||| || Sbjct 5751338 CAACGTCTTATTCATATGGCAGCCCT----CAAGACAGATG-----GGTCCAAACCTTAC 5751288 Query 2360 GACCTCCTGGGACCCCAGGAACAGCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGC 2419 | |||||||||||| | ||| ||| |||||||||| || ||||| || || || | Sbjct 5751287 CATCTCCTGGGACCCTAAGAATTCCAGAAAGCAGAACTATACCTGCATAGCTGAGAATCC 5751228 Query 2420 TGTGAGCAAT 2429 ||| |||||| Sbjct 5751227 TGTCAGCAAT 5751218 >seq184 Length=6332433 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||| ||||||||| | || ||||| ||| Sbjct 3575806 CCCTCATGCTGCACATAGCATGTGTATCTCTGCTCCTCTCCAGAATGCACCACGATGGCT 3575865 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||||||||| || ||||| || || || || | || || | |||| | || || Sbjct 3575866 GCCCATTTTTGGAAGGTCCCGTCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTCCTGG 3575925 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || || | |||||| | ||| || | | || || || || || || |||| Sbjct 3575926 GTCTGGTCCTCCCTGTCTCGTTGCCAGGTCAGGGTGATCTCTGCTGGGTAGAAGCCCAGG 3575985 Query 14358 GCCCAGCAC 14366 ||||||||| Sbjct 3575986 GCCCAGCAC 3575994 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || ||| |||||||| ||| ||||||| | | || || | |||| Sbjct 5641140 CCCTCATGCTGCACAAGACAAGTGTATCTCTGCTCCTCTCCAGGATGCACCACCACAGCT 5641199 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || ||||||||||| || || | || || | |||||||||| || Sbjct 5641200 GCCCACTTCTGGAAGGTCCCATCTCCTGCAGGCCTGGTCTCCACAAGCTCTGTATCCTGG 5641259 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || || || || | | ||| || | | || ||||| || || || ||||| Sbjct 5641260 GTCTGCTCCTCCCCATCCCTCTGCCAGGTCAGCATGATTTCAGCTGGGTAGAATCCCAAG 5641319 Query 14358 GCCCAGCAC 14366 ||||||||| Sbjct 5641320 GCCCAGCAC 5641328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629214230561280