Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq94 152 6e-32 seq11 129 7e-25 seq223 120 4e-22 seq202 107 2e-18 seq51 87.8 2e-12 >seq94 Length=13213440 Score = 152 bits (168), Expect = 6e-32 Identities = 316/462 (68%), Gaps = 19/462 (4%) Strand=Plus/Plus Query 37179 GCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCT 37238 ||||| ||||| ||||| ||||||||||| || | | |||| | ||||| || | || Sbjct 4997831 GCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGTTCACTGGAAAATGTGAGGCCA 4997890 Query 37239 GGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATA 37298 |||| | ||| ||| || | ||| ||||||| ||||||||| | || |||| | Sbjct 4997891 GGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCAAAAGAACTGGAGAAGA---TT 4997947 Query 37299 CCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA---CTATAATCAGAA 37355 ||||| ||||||||||| ||||| | || ||| | || || || | || | Sbjct 4997948 CCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTAGGT--AATTTCTTTGTTCCCAG 4998005 Query 37356 ATCCAtttttttGTCCAATCTGC--CTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 ||| | ||| ||||| | || || ||||| ||||||||||| || | Sbjct 4998006 C-CCAACGCAAGGCCCAGTCTGCTGCCTTCTTT--ACACAGGGCATTGTTTCAATGGCAT 4998062 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 | | |||||| | ||| | | |||| | || || ||||| || | |||||||| Sbjct 4998063 TGATGAGAAATTCCCATTCCTTAGGATCTTTAAT----GTGTCAATAAGGAGACTATACA 4998118 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 ||||||| || || ||||| || || || || || ||||| ||||| | ||||| | || Sbjct 4998119 TTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG-TA 4998177 Query 37534 AT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 || || || || | ||||| || | | ||||||||| ||| | |||||||| || Sbjct 4998178 ATCTGGACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCACTGTGCCATCACTTGCA 4998237 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 |||||||| || ||||||| |||||| | || || ||| Sbjct 4998238 GCAAAGAAGGCCAGAACATGGGATATAAAGTAACTCTCCTCA 4998279 >seq11 Length=32252908 Score = 129 bits (142), Expect = 7e-25 Identities = 285/428 (67%), Gaps = 42/428 (10%) Strand=Plus/Plus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| || || ||||| ||||| |||| ||| ||| ||||||| || | |||||| Sbjct 31685061 TTTGAACACTAGGCAAGCAAAGTCACAGTGTACACCCTCAACTCTACTCATAAGTTCATT 31685120 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA-AAAG 37281 ||||| || || ||| ||| |||| ||| || | ||| ||||||| ||| |||| Sbjct 31685121 GGAAAATGTGGGGCCAGGCCTTAGTCCTCATTTCTTGAGCCAGAATATTG--GCACAAAG 31685178 Query 37282 ATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTG 37341 | ||||| |||| || ||||| |||||||| || ||||||| |||| | || Sbjct 31685179 AAGCAGAACAGAAGATTCCTTCCACTGCTGCCAAGGCTACAACACGTTTTCC-------- 31685230 Query 37342 AACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTG 37401 ||||| || || || ||||| |||| || Sbjct 31685231 -------ATCAG-----CAGCTTCTT-----------CTTTA------CACAGGGCATCA 31685261 Query 37402 TTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA 37461 ||||||| || || |||||||| | ||| | | |||| | || ||||| ||||| | Sbjct 31685262 TTTCAATGGCATTGAAGAGAAATTCCCATTCCTTAGGATCTTTAATGTAAGTGTCAATAA 31685321 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 | | ||||||||||||||| || || ||||| | || || || || ||| | ||||| Sbjct 31685322 GGAGACTATACATTTCAGAATGTATGTTTTCCAAGGCAATTTGGAAGCCACAGAAACAGT 31685381 Query 37522 TAGCTTCAGATAATTGA-ACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATC 37580 |||||| | |||| | || || | ||||| | | | |||||| || ||||| Sbjct 31685382 GAGCTTCTG-TAATCCAGACTTCTTGGCTAAACCGTTCTGTCAGGTTTTCGTTCACTATG 31685440 Query 37581 CCATCACT 37588 |||||||| Sbjct 31685441 CCATCACT 31685448 >seq223 Length=5023716 Score = 120 bits (132), Expect = 4e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | |||| ||| || Sbjct 3965824 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3965765 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| |||||||| ||||||||||| || ||||||||||||||||| ||| Sbjct 3965764 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCT 3965705 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 3965704 ACAACACGT 3965696 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| | |||||||||||||| || | ||||||||||||||| || || ||||| || || Sbjct 3962640 ATCTTTAATATAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3962581 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTC 37528 || || || ||||| ||||| | |||||| Sbjct 3962580 AATTTGGAAGCCATAGAAACAGCGAGCTTC 3962551 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| || ||||| || || || || | || || || || ||||| ||||| Sbjct 3966772 CATCACTCCCATCTTCTGATACTCGCCTACGCGCTTCTCAAAGAAGTTAGTCTTCCCTTC 3966713 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||| ||||| |||||||||||||| ||||| Sbjct 3966712 CAGTGAAATATTCTCCATAAAATCAAACGGATT 3966680 >seq202 Length=5697000 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | ||||| || | Sbjct 3890749 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGGCCTCTCTTCT 3890690 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| || || || |||||||||||||| |||||||| ||||| || || ||||| | Sbjct 3890689 TCAGCCAGAAAATCGCAGCAAAAGATCCAGAGAAGAAAATTCCTTCTACAGCCGCAAAGG 3890630 Query 37318 CTAC 37321 |||| Sbjct 3890629 CTAC 3890626 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 36888 TGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCC 36947 ||||| || ||||||| |||| ||||||||||| || ||||||| ||| || |||||| Sbjct 3906049 TGATACTCCGAAACTCGTTTTTCAAAAAAATTTGTTTTCCCTTCTAATGAAATGTTTTCC 3905990 Query 36948 ATAAAATCAAATGGATT 36964 ||||||||||| ||||| Sbjct 3905989 ATAAAATCAAAGGGATT 3905973 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| | ||||||||||| ||||| ||||| |||||||| ||||||| ||| || ||| Sbjct 3883220 ATCTCTGATATAAGTATCTATTAGCAAACTGTACATTTCTGAGTGAACATTCTCGATAAG 3883161 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTC 37528 || ||||| ||||| ||||| | ||| || Sbjct 3883160 AATTTGAAAGCCATAGAAACAGCGAGCCTC 3883131 >seq51 Length=18525102 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| || || |||||||| |||||||| || | | |||| | ||||| || | Sbjct 17120055 CAAGCAAAGTCGCAGTGTAAACCCTCATCTCTGCTGACAAGTTCAGTGGAAAATGTGAGG 17120114 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || |||||||| | | ||| || | ||| ||| |||||| || || | || || Sbjct 17120115 CCAGGCATTAATCTTTATTTCTTGAGCCAGGGTATCAATGCAAAGGAAGCAAAGAATAAG 17120174 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGAC 37326 || ||||| ||| ||||||||||||||| || Sbjct 17120175 ATTCCTTCCACTACTGCAAATGCTACAACAC 17120205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592251882078720