Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq353 141 8e-29 seq21 138 9e-28 seq316 131 1e-25 seq82 109 4e-19 seq116 98.7 8e-16 >seq353 Length=2119611 Score = 141 bits (156), Expect = 8e-29 Identities = 187/256 (73%), Gaps = 14/256 (5%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| ||||| ||||| || || || ||| |||||| || ||||| ||| | Sbjct 1121210 ATGAGCTCCTTGTGGGGGTTCTTTGAGTTCTCTACTGCGGACTATATTAATCCTATCTTT 1121151 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 || |||||||||||| || |||||||||||||| ||||| |||||||| ||||||| || Sbjct 1121150 CAAAGGTCTATTCTTCTCAGGGATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 1121091 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-----CTC-GAAAGTGTTTAAAATC 112253 ||| || ||| ||||| || || | ||||| || ||| | || | || || || Sbjct 1121090 CTGTTTCCCTTCTACTGAGGAGGTTGTGGTCATGGTCATTCTCTGGAAATAGTTGAACTC 1121031 Query 112254 TTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTG 112312 || | || || |||| || || |||||||| || || ||||||||| |||| Sbjct 1121030 ATTCCTGAG------CGGGGGCCAGGGTAGGTCTCCGTTCTTGCCAATGCCCATGTTCTG 1120977 Query 112313 GACACACGGCCACGAT 112328 | |||| || ||||| Sbjct 1120976 G-GACACAGCAACGAT 1120962 >seq21 Length=27434213 Score = 138 bits (152), Expect = 9e-28 Identities = 181/247 (73%), Gaps = 14/247 (6%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| ||||| ||||| || || || |||||||||| || ||||||||| | Sbjct 6695960 ATGAGCTCCTTGTGGGGGTTCTTTGAGTTCTCTACTGAGGACTATATTAATCCTGTCTTT 6696019 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | |||||||||||| || |||||||||||||| ||||| |||||||| ||||||| || Sbjct 6696020 TAAAGGTCTATTCTTCTCAGGGATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 6696079 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGG-----CTC-GAAAGTGTTTAAAATC 112253 ||| || ||| ||||| || || | ||| | || ||| | || | || || || Sbjct 6696080 CTGTTTCCCTTCTACTGAGGAGGTTGTGGTAATGGTCATTCTCTGGAAATACTTGAACTC 6696139 Query 112254 TTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT- 112311 || | ||| || |||| || || |||||||| || || | ||||||| ||| Sbjct 6696140 ATTCCTGAGT------GGGGGCCAGGGTAGGTCTCCGTTCTTGCCAACGCCCATGTTCTG 6696193 Query 112312 GGACACA 112318 ||||||| Sbjct 6696194 GGACACA 6696200 >seq316 Length=2809289 Score = 131 bits (144), Expect = 1e-25 Identities = 126/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 ||| || |||| ||| || |||||||| ||||| || | ||||||||| ||||| || || Sbjct 1685910 TAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGG 1685969 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 ||||| || |||||||| || ||||||||||| |||||||| ||||| || || | Sbjct 1685970 CACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGACAGGAGAGTTCACCATTCAC 1686029 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 |||||| ||||| || | || ||||| || || || ||||| Sbjct 1686030 CACGTAGAACTGGCAAAGGGCATGGCAGGGTGGCAGGGCCAT 1686071 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| ||| | || |||||||| |||||||||||||| || ||||| || || ||||| | Sbjct 1689903 TCATATCCTTATATTCTGCTCCAAAATGCCTCCACTGAAAGCCGTAGACAGGGCCCAGAT 1689962 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 |||| || || | | || ||| ||||||||||||| | ||| || ||||| | Sbjct 1689963 CTCCTTCATCTCGGGTGGAAAATCCCAGGCTGTCCAAAAAGTCACGGGATCCATTGGCAT 1690022 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||||||||| || || || ||||| || | || ||||| || Sbjct 1690023 CCCAGATCTTTACGCCTTTGGAAGACAGCTCCTTAGCATTGGTGGAGCC 1690071 >seq82 Length=15125257 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || |||||||||| || ||||| ||| ||| |||||||||||| || ||| Sbjct 6722612 TTGAGTTCTCTACTGAGGACTATATTAATCCTATCTTTCAAAGGTCTATTCTTCTCAGGG 6722671 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 6722672 ATGGAGAACCAGGTCTTCCTACCCATGATCACCAAATTCTGTTTCCCT 6722719 >seq116 Length=11478430 Score = 98.7 bits (108), Expect = 8e-16 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 112093 GGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTA-TCCTGTCTCTCAGAGGTCTATT 112151 ||| | ||||| || || || |||||||||| ||| |||||||| ||| || |||||| Sbjct 10967676 GGGAGTTCTTTGAGTTCTCTACTGAGGACTAGTATTAATCCTGTCTTTCAAAGATCTATT 10967617 Query 112152 CTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCT 112211 ||| || ||||||||||||| || ||| || |||| ||||||| ||||| || || Sbjct 10967616 CTTCTCAGGGATGGAGAACC-AGGCTTCCTCCCCAAAATCACCAAATTCTGTTTCACTTC 10967558 Query 112212 GACTGAAGACGTAGCGGTCAAGG 112234 ||||| || || | ||||| || Sbjct 10967557 TACTGAGGAGGTTGTGGTCATGG 10967535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408573935123264