Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq2236 96.9 1e-15 seq28 89.7 1e-13 >seq2236 Length=6892 Score = 96.9 bits (106), Expect = 1e-15 Identities = 189/274 (69%), Gaps = 14/274 (5%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| || || ||||||| ||| ||||||| | || || || || | || | | | Sbjct 2638 TTCCTTAGGGGTGTTATGAAAGAGTAGCTCCACGTTCTGGCTTGGCTGAAAAACATTTCA 2697 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | || || || ||||||||||| | | Sbjct 2698 TAGATGTAGGAGCTGGTGTGATAGATGAAGATTACAGAGGAAATGTTGGTGTTGTACTGT 2757 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGG-TGATAGGATTGCTCAGTTAATT 1136 |||||||| || | | ||| | | || ||| |||| ||||||| ||| | ||| Sbjct 2758 TTAATTTTGGCAAAGAAAAATTT-GGAGTAAAAAAGGTTGATCGGATTGCACAGCTTATT 2816 Query 1137 TGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCG 1190 |||||| | | |||| ||||| |||||| ||| ||| || || || | Sbjct 2817 TGTGAA----CGGATTTTTTATCCA--GAAATAGAGGAAGTTCAAGTTTTGGATGACACT 2870 Query 1191 GAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 ||||||||||| | ||| ||||| ||||| |||| Sbjct 2871 GAAAGGGGTTCAGGAGGTTTTGGTTCTACTGGAA 2904 >seq28 Length=22341012 Score = 89.7 bits (98), Expect = 1e-13 Identities = 182/262 (69%), Gaps = 14/262 (5%) Strand=Plus/Minus Query 970 GTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGTGGGTG 1029 ||||||| ||| ||||||| | || || || || || || | | || ||||| | Sbjct 17268825 GTTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACATTTCATAGATGTAGTAA 17268766 Query 1030 CTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTTTAGCG 1089 ||||||| || ||| ||| | || || ||| ||||||| | | ||||||||| || Sbjct 17268765 CTGGTGTGATAGATGAAGATTACAGAGGAAACATTGGTGTCATACTGTTTAATTTTGGCA 17268706 Query 1090 ATAAGCGTTTTCATATTTCAAGAG-GTGATAGGATTGCTCAGTTAATTTGTGAAAAGGCT 1148 | | ||| | | | || || ||||| ||||||| |||| ||||||||| || | Sbjct 17268705 AAGAAAAATTTGA-AGTAAAAAAGAGTGATCGGATTGC--AGTTTATTTGTGAAT-GGAT 17268650 Query 1149 GTTTTTCCATCCATTCAAATAGTGGA--TTCC----TTAGAGGATTCGGAAAGGGGTTCT 1202 |||||| ||||| |||| | ||| ||| ||||| || | ||||||||||| Sbjct 17268649 GTTTTTA-ATCCAG--AAATCGAGGAAGTTCAAGTTTTAGATGACACTGAAAGGGGTTCA 17268593 Query 1203 GCAGGATTTGGGTCTACCGGAA 1224 | ||| ||||| ||||| |||| Sbjct 17268592 GAAGGTTTTGGTTCTACTGGAA 17268571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138667160471808