Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq271 120 2e-22 seq94 116 3e-21 seq29 116 3e-21 seq266 114 1e-20 seq58 104 2e-17 seq516 102 6e-17 seq350 102 6e-17 seq364 100 2e-16 seq196 93.3 3e-14 seq95 93.3 3e-14 seq194 89.7 4e-13 seq27 82.4 6e-11 seq16 82.4 6e-11 >seq271 Length=3743906 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || ||||| || || ||||| || | || || | | |||| || | ||| Sbjct 1490780 ATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGGCCATCCTCTAGTTG 1490839 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||||||||||||| |||||| || || || || ||||| || || ||||| ||||| Sbjct 1490840 TTTGCCTGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATTTT 1490899 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | |||||| | || || |||||||||| || ||||| || Sbjct 1490900 GGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCAGT 1490959 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 1490960 CAGGGTCTTCACAAAGATCTGCAT 1490983 >seq94 Length=13213440 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || ||||| || || ||||| || | || || | | |||| || | ||| Sbjct 12382921 ATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTGCGGCCATCCTCTAGTTG 12382862 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||||||||||||| |||||| || || || || ||||| || || ||||| ||||| Sbjct 12382861 TTTGCCTGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATTTT 12382802 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | |||||| | || || |||||||||| || ||||| || Sbjct 12382801 GGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCAGT 12382742 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | | || ||||| |||||||| Sbjct 12382741 CAGGGCCTTCACAAAGATCTGCAT 12382718 >seq29 Length=23282948 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || ||||| || || ||||| || | || || | | |||| || | ||| Sbjct 10737804 ATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGGCCATCCTCTAGTTG 10737863 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||||||||||||| |||||| || || || || ||||| || || ||||| ||||| Sbjct 10737864 TTTGCCTGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATTTT 10737923 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | ||||| | || || |||||||||| || ||||| || Sbjct 10737924 GGCTTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCAAGAGTGATGGTCTTGCCAGT 10737983 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 10737984 CAGGGTCTTCACAAAGATCTGCAT 10738007 >seq266 Length=3591710 Score = 114 bits (126), Expect = 1e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || ||||| || || ||||| || | || || | | |||| || | ||| Sbjct 2217948 ATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGGCCATCCTCTAGTTG 2217889 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || |||||||||||| |||||| || || || || ||||| || || ||||| ||||| Sbjct 2217888 TTTGCCTGCAAATATCCGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATTTT 2217829 Query 101386 TTG-TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | | ||| ||| | || | ||||| | || || |||||||||| || ||||| | Sbjct 2217828 TGGCTTTGACATTCTCGATGCTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCAG 2217769 Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469 | | || || ||||| |||||||| Sbjct 2217768 TCAGGGTCTTCACAAAGATCTGCAT 2217744 >seq58 Length=17685835 Score = 104 bits (114), Expect = 2e-17 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || |||| || || ||||| || | || || | | |||| || | || Sbjct 7771790 ATGCAGGGTGGACTCTTACTGGATGTTGTAGTCTGAGAGTGTACGGCCATCCTCTAGCTG 7771731 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||||||||||||| |||||| || || | |||||||| || || ||||| ||||| Sbjct 7771730 TTTGCCTGCAAATATCAGACGCTGCTGGTCAAGAGGAATGCCCTCCTTGTCTTGGATTTT 7771671 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| |||| | ||||| | || || |||||||||| || ||||| || Sbjct 7771670 GACTTTGACA--TTCTCGATTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCAGT 7771613 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| | |||||| Sbjct 7771612 CAGGGTCTTCACAAAGAACTGCAT 7771589 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || || || || || || | | |||| || | || Sbjct 3160996 TGCAGGGTGGACTCTTTCTGGATGTTATAGTCCAAGAGTGTACAGCCATCCTCTAGCTGT 3160937 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || |||||| || ||| || || |||||||||||| | || ||||| ||||| Sbjct 3160936 TTGCCAACATATATCAGACTCTGCTGGTCAGGCGGAATGCCTCCCTTGTCTTGGATTTTG 3160877 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||| | ||||| |||||||||| || ||||| || Sbjct 3160876 GCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCAGTC 3160817 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 3160816 AGGGTCTTCACAAAGATCTGCAT 3160794 >seq516 Length=578746 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || | ||| || || ||||| || | | || | | |||| || | ||| Sbjct 124260 ATGTAGGGTGGACTATTTCTGCATGTTGTAGTCTGAGGGTGTACGGCCATCCTCTAGTTG 124201 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||||||||||||||| || || || || ||||| || || ||||| ||||| Sbjct 124200 TTTTCCAGCAAATATCAAACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATTTT 124141 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | | | |||||| | || || |||||||||| || ||||| || Sbjct 124140 GGCTTTGACATTCTTGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCAGT 124081 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || | ||||| |||||||| Sbjct 124080 CAGGGTCTCCACAAAGATCTGCAT 124057 >seq350 Length=2027970 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || ||||| || || ||||| || | || || | | || || | ||| Sbjct 893830 ATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTATGGCCGTCCTCTAGTTG 893771 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||||||||||||| |||||| || || || || ||||| || || ||||| ||| | Sbjct 893770 TTTGCCTGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATTAT 893711 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | |||||| | || || ||||| |||| || ||||| || Sbjct 893710 GGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGCGTGATGGTCTTGCCAGT 893651 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 893650 CAGGGTCTTCACAAAGATCTGCAT 893627 >seq364 Length=1903484 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAG--TTCTGGCATCGTCCAAT 101323 ||| ||||| || | | | || || ||||| || |||||| | | | |||| || | Sbjct 944323 ATGCAGGGTGGACTGTCTCTGGATGTTGTAGTC--CGATAGCGTACCGCCATCCTCTAGA 944266 Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 || || ||||||||||||| |||||| || || ||||| ||||| || || ||||| || Sbjct 944265 TGTTTGCCTGCAAATATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGGTT 944206 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 || ||| ||| | || | ||||| | || || |||||||||| ||| ||||| Sbjct 944205 TTGACTTTGACATTCTCGATGATGTCACTGGGCTCGACCTCAAGAGTGATCGTCTTGCCA 944146 Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469 || | || || ||||| || ||||| Sbjct 944145 GTCAGGGTCTTCACAAACATTTGCAT 944120 >seq196 Length=6454996 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| | ||| | || || ||||| || | || || | |||| || | || Sbjct 1585114 ATGCAGGGTGTACTCTATCTGAATGTTGTAGTCTGAGAGTGTATGGCCATCCTCTAGCTG 1585173 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||||||||||||| |||||| || || || || ||||| || | ||||||||||| Sbjct 1585174 TTTGCCTGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCCTGTCTTGAATTTT 1585233 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | | | |||||| | || || ||| |||||| || ||||| || Sbjct 1585234 GGCTTTGACATTCTTGATGGTGTCACTGGGCTCGACCTCAGGAGTGATGGTCTTGCCAGT 1585293 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 1585294 CAGGGTCTTCACAAAGATCTGCAT 1585317 >seq95 Length=13545823 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/206 (70%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 101265 AATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATT 101324 |||| || || | | ||| || |||||||| || | || ||| | |||| || | | Sbjct 1488 AATGCAGAGTGAACTGTTTCTGGATATTGTAGTCAGAGAGTGTTTGGTCATCCTCTACCT 1429 Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATC-GGGCGGAATGCCTTCTTTATCTTGAATT 101383 | || ||||||||||||| | |||| || || ||| |||||||| || || ||||||||| Sbjct 1428 GTTTGCCTGCAAATATCAGATGCTGCTGGTCAGGGGGGAATGCCCTCCTTGTCTTGAATT 1369 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 || ||| ||| | | | |||||| | | || ||||||||| || ||||| Sbjct 1368 TTGGCTTTGACATTCTTGATGGTGTCATTAGGCTTGACCTCAAGAGTGGTGGTCTTGCCA 1309 Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469 || | | || ||||| |||||||| Sbjct 1308 GTCAGGATCTTCACAAAAATCTGCAT 1283 >seq194 Length=6323617 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || | || || || ||||| || | || || | |||| || | || Sbjct 712698 ATGCAGGGTGGACTTCTTCTGGATGTTGTAGTCTGAGAGTGTATGGCCATCCTCTAGCTG 712757 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||||||||||||| || ||| || || || || ||| |||| || ||||| |||| Sbjct 712758 TTTGCCTGCAAATATCAGACACTGCTGGTCAGGAGGGATGACTTCCTTGTCTTGGGTTTT 712817 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | || | ||||||| | || || |||||||||| || ||||| | Sbjct 712818 GGCTTTGACATTCTCGATAGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCAGG 712877 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | | || ||||| |||||||| Sbjct 712878 CAGGATCTTCACAAAGATCTGCAT 712901 >seq27 Length=21973199 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||| || || ||||| || | || || | | |||| || | || Sbjct 1573602 TGCAGGGTGGACTCTCCCTGGATGTTGTAGTCTGAGAGTGTACGGCCATCCTCTAGCTGT 1573661 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || | ||||||||| || ||| || || || || |||||||| || ||||| ||||| Sbjct 1573662 TTGTCCACAAATATCAGACACTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATTTTG 1573721 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || |||||| | || || ||||||||||| || ||||| Sbjct 1573722 GCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGAGTGACGGTCTTGCC---- 1573777 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || | ||| |||||||| Sbjct 1573778 AGAGTCTTCATAAAGATCTGCAT 1573800 >seq16 Length=30800738 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| |||| || ||||| ||||| |||| | ||| || || || || |||||||||| Sbjct 5646714 CATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCTT 5646655 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 | |||| || ||| || ||| | || | |||||| | || | ||||| |||| Sbjct 5646654 TGCCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTTGGCTCAATGTCAAGGGTGA 5646595 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 ||||||| || || || || ||||| |||||||| || Sbjct 5646594 TGATTTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTGT 5646555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396236053690176