Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq34 89.7 4e-13 seq2236 87.8 1e-12 seq33 86.0 5e-12 seq95 82.4 6e-11 >seq34 Length=22791580 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| ||||| || | || | || |||| |||| Sbjct 22199035 TGAAGAGTGGACTCCTTCTGGATGTTGTATTCAGACAGGGTCCGCCCATCTTCCAGCTGC 22199094 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || | ||||| || |||| ||| ||||| | |||| || |||||||| | ||||| Sbjct 22199095 TTTTCAGCAAAGATGAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCCCGGATCTTG 22199154 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || |||| || ||||| | ||| || || || ||||| Sbjct 22199155 GCCTTGACATTCTCGATTGTGTCCGACGGTTCAACCTCAAGCGTGATGGTCTTCCCCGTG 22199214 Query 48744 AAAGTTTTTACAAAAATCTGCATCGTG 48770 | |||||||| |||||||||||| || Sbjct 22199215 AGGGTTTTTACGAAAATCTGCATCTTG 22199241 >seq2236 Length=6892 Score = 87.8 bits (96), Expect = 1e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 |||||||| || |||||||||| | || ||||||| || |||| || || |||| Sbjct 2836 GGATAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGATCAACCTTTTTTACTCCAAAT 2777 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 | | | | | ||| ||||| || || || || || || |||||||| ||||| ||| Sbjct 2776 TTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTGTAATCTTCATCTATC 2717 Query 9187 ACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 |||||||| || || || ||||| || || | || | ||||| || || || Sbjct 2716 ACACCAGCTCCTACATCTATGAAATGTTTTTCAGCCAAGCCAGAACGTGGAGC 2664 >seq33 Length=21904142 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| || | ||| || ||| ||| || || || ||||| ||||| || | || | || Sbjct 10626746 CAATACAAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTCCGCCCATC 10626805 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||| || || ||||| || |||| ||| ||||| | |||| || |||||||| Sbjct 10626806 TTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTC 10626865 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| || ||| | | | || || | || ||||| | ||| || || Sbjct 10626866 CTGGATCTTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 10626925 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| | |||||||| |||||||||||| || Sbjct 10626926 CTTCCCCGTGAGGGTTTTTACGAAAATCTGCATCTTG 10626962 >seq95 Length=13545823 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 48553 GCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGT 48612 ||| |||| |||| || ||| || ||| || |||||||| ||||| || || | || | Sbjct 1497 GCAGCACCGAATGCAGAGTGAACTGTTTCTGGATATTGTAGTCAGAGAGTGTTTGGTCAT 1438 Query 48613 CGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTCCTTG 48671 | || | ||| || || ||||||||||| |||| || || | ||||| |||||||||| Sbjct 1437 CCTCTACCTGTTTGCCTGCAAATATCAGATGCTGCTGGTCAGGGGGGAATGCCCTCCTTG 1378 Query 48672 TC 48673 || Sbjct 1377 TC 1376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380896893008064