Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq296 196 9e-45 seq45 141 2e-28 seq5 102 2e-16 seq202 87.8 3e-12 seq44 86.0 1e-11 >seq296 Length=2855797 Score = 196 bits (216), Expect = 9e-45 Identities = 192/248 (77%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || || ||| || ||||| ||||||||| ||||||||||| Sbjct 2545344 AGCAGCTGGCAGCCGTTGCTCACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 2545403 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || || ||||| || ||||| || | ||||||| |||||| Sbjct 2545404 TCCCGGAGGAGGCCGGCCGTGTTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 2545463 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 2545464 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 2545523 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || || || || ||| | |||||||| ||||| || ||||||| ||| || Sbjct 2545524 CGGTTCCGCAGCCTTTTGCGCTCCACTTTGATGCGCTCCTGATCTTCCATGTTGATGGGG 2545583 Query 241625 GACTTGGG 241632 ||| |||| Sbjct 2545584 GACATGGG 2545591 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/115 (76%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | || || || ||||| ||||||| Sbjct 2545381 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCCGTGTTCGACAGCCCCGCGT 2545440 Query 238986 TATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | ||||||| | | |||||||| ||||||||||| |||||||| Sbjct 2545441 TCTCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 2545495 >seq45 Length=19174779 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | || || | ||| Sbjct 18845477 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCTGTGGACGCCAGC 18845418 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| |||||| |||||||| || |||| |||||| ||||| Sbjct 18845417 TCCGTGTTCTGGCTCTTGAGCGTCTTCACCTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 18845358 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | ||| || || || || |||||||| |||||| Sbjct 18845357 TTGCGCTTGCGGCACTTGGAGGCGGCTATGCGATTTCGCAGCCTTTTACGTTCTGCCTTG 18845298 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 18845297 ATGCGCTCCTGTGTGTCCATGTCGATAGGCGAC 18845265 >seq5 Length=38686854 Score = 102 bits (112), Expect = 2e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | |||||||||| ||| Sbjct 18407276 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCATTTGGAGGCA 18407335 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| |||||||| |||||||||| Sbjct 18407336 GCTATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGTTCCTGTGACTCCATGTCG 18407395 Query 241619 ATCGGAGAC 241627 || |||||| Sbjct 18407396 ATGGGAGAC 18407404 >seq202 Length=5697000 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 |||| || | ||||||||| | ||||| || ||| |||||||| | || |||| | Sbjct 3890749 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGGCCTCTCTTCT 3890690 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 | ||||||||||| || || ||||| ||||||||||| || || || || ||||| || | Sbjct 3890689 TCAGCCAGAAAATCGCAGCAAAAGATCCAGAGAAGAAAATTCCTTCTACAGCCGCAAAGG 3890630 Query 48273 C 48273 | Sbjct 3890629 C 3890629 >seq44 Length=20396770 Score = 86.0 bits (94), Expect = 1e-11 Identities = 96/125 (77%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| | || ||||| |||||||||||| ||| || |||||||| || ||| Sbjct 12614726 GTATACTCCACTACTTCTGTGCATAGGTTGCTGCATTTGATTGTTCCCAGGTTTTGCTGG 12614785 Query 213588 TTTGACT-TTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCT 213645 || ||| || || | || ||||| |||||||||||||| |||| || |||||| || Sbjct 12614786 TT--ACTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCT 12614843 Query 213646 GGGAC 213650 | ||| Sbjct 12614844 GAGAC 12614848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931430704005120