Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq108 349 4e-91 seq165 172 6e-38 seq449 91.5 2e-13 >seq108 Length=12252355 Score = 349 bits (386), Expect = 4e-91 Identities = 677/994 (68%), Gaps = 19/994 (2%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| || ||| || |||| ||| |||| ||| || | ||| || || ||| || || Sbjct 7341562 TGTCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCGACATCGGTGTCAAACTTG 7341621 Query 160107 TTTGCGAACA---GATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAAC 160163 || || |||| |||| || ||| || ||||| | || |||||| | ||||| Sbjct 7341622 TTGGCAAACAAGTGATGCTG-GCGC-----AGCATCCACTTCAGGTCTCCAGCACCGAAG 7341675 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 ||||| || || || | ||||| ||| |||| || ||||| | || || || | ||| Sbjct 7341676 ACGCACACAGAGCGCACATGCACCCCGCTGCAGGGTGGGTATGGGGCGCCCTTGGTGACG 7341735 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCG 160283 || || || | || |||||||| || || | | || ||||||||||| || |||| Sbjct 7341736 TCGCCCTCAAAATAGTGCCACTTGACGAAGCGCACGATGGCCTGCATGTCCGACAAGTCG 7341795 Query 160284 TATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 || ||| | ||| | ||||| || | | ||||| | ||| | ||||||||| Sbjct 7341796 TACTTGGGGCTAGCGGGGAGCGCACCAGGGGCATCCGGCATCCTCTGGATGGTGGCCCAG 7341855 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 || | || ||||||||||| |||||||| | ||| ||||||| | ||| | Sbjct 7341856 AGATACTCATCGGGGCTGTAAGTGTCCTTGGCCCACTCCATGAGATGGTGGATCCGCTCA 7341915 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | ||||| | || |||||| ||| | || || || || |||||||||||||| Sbjct 7341916 TTTTCAAGAACATAAGCCACGTAGCTCCTGCTGACCACGAAATAGGCGCTGCCGGAGAAG 7341975 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | || |||||| ||||||| || ||||| | || || ||| Sbjct 7341976 ATGGGAGTTTGGATGGGCGGCCGCCCTTTGTCAGTCCCCGTGTTCACGAGCATCCCATTC 7342035 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 || | | | |||||||||||||| || ||| | | ||||| |||||| || Sbjct 7342036 ACGACTTCATAACGCTTCTTCCACCTTTCCTCCTTATTGGCGGGCATTTTTTCCGTTTCC 7342095 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 ||| |||| | || || || || |||| ||||||||| |||||||| || | | Sbjct 7342096 AGATTGTTTTCCCCCATCAGGGACTTGAGCTTGCGGACGATCTCCAGGTTCGTTTTAATC 7342155 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTC-GTGCAG 160702 || || || | ||||| | ||| || | ||||||||| | | |||| | || |||||| Sbjct 7342156 GGGAAATCCATGCCGCAGAGGTTGATGAGGTACTTCCAGGTGGTGCTC-GTTCTGTGCAG 7342214 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 |||| ||||||||| | || ||||| || ||||||||||| || ||||| ||| |||| Sbjct 7342215 GTCCTGCATGCAATTGAGGTCGGCCTGGACCCGGCTCCAGGACGCATACACCACGCTCTC 7342274 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCAC----CGCCA 160818 || | |||||||| || ||||| ||||||| ||| | || |||| ||| | | | Sbjct 7342275 CAGCTGGCTGGCCACGAACACGTTGCCGAAACAGGACGCAATGCCCATCACTGCACCCAA 7342334 Query 160819 GAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGT 160878 ||||||| | ||||| ||| ||| ||||| | |||||| | ||||||||| || Sbjct 7342335 GAAAGAA----TCATCCGATTTTTTGTCTACGTGTATGCAATAGAAATTCTGAGGCATGT 7342390 Query 160879 AGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGG 160938 |||||||||| | | ||| || | ||| || || || || || | ||| || || || | Sbjct 7342391 AGATGGCCCTCAAGAGCCTGTCCAGCATTTCGATTTTGTGGTGAACCACTATGGAATATG 7342450 Query 160939 CTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGA 160998 | || || || || | ||| || || |||| | | | | || || | ||||||| Sbjct 7342451 CAATGGGGAATTCCGCCTCTTCTTTGCTAAGGGGCTCCATGATATATTTACTAGTCTTGA 7342510 Query 160999 TAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | || | | || |||| |||||||| || || Sbjct 7342511 TGAAGGATGCGCAGTCCCTGGTCATGTTTATGTA 7342544 >seq165 Length=7787208 Score = 172 bits (190), Expect = 6e-38 Identities = 232/323 (72%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | ||| || || ||||| || | || || || |||||||||||| Sbjct 6697543 TAAAGCGTGAGGCAGGCTTTCCCTGAGATCTTCCCAGCGCCAAATGTATTGAAGAGGCAC 6697484 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 | | | || ||||| ||||||| ||||||||||||||| |||| ||||||| ||| Sbjct 6697483 AAGTAACATCCTTCATCCTCCAGGGTGGTATTCCAAAAGGTTATGGTTGAGTCGTTGAGT 6697424 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| | || ||||||| | || ||| | | ||| |||| ||||| || |||||| Sbjct 6697423 CCCAGGTAGGTGATGTTCAACCTGTCCTTAAAGGCAGGCTGAATCACAACCCCATGGTTC 6697364 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||| | ||| |||||||| ||||||| | | | | || |||||||| || || ||| Sbjct 6697363 TTGCTGTAAGTGACCATGTTCACCGGGCTTGAAGGCCTCATTTTCTGCCACGTCACAATC 6697304 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 | || || | | || | ||| ||||||| || || || || |||| ||| | ||| Sbjct 6697303 AAGACTTCCTGGTAAGTGTTCAGAAAACATCTTAGGGACGCAGGTGTGTGCAGTGGCTCT 6697244 Query 168450 CGCTCATCTTGAGTTACGACCTG 168472 | ||||| || || || || || Sbjct 6697243 CTTTCATCCTGGGTCACTACTTG 6697221 Score = 123 bits (136), Expect = 3e-23 Identities = 161/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 |||| || | ||| || ||||| |||| ||| || |||||||| |||||||| || Sbjct 6701755 GTTTTCCTGAAGTCAGTCACAGTCCCCAGATGCAGCACCTTGCAAATCACCTCC---TTC 6701699 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || | ||||||| || ||||| || || | | || || ||| ||| || |||||| Sbjct 6701698 CCCATCTGACTCTCAGGGTCTTTGACATGCAGGACACTGGTGACAGATGTGGTCCCATTG 6701639 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | ||| ||| | ||||| |||||||||||||| |||| ||| |||||| | || Sbjct 6701638 GGGTGTGAAAACCTCACAGTGCTATTCTCAATCCCTGACCCTGTCACGTTCCAGGAGATC 6701579 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTAAG 168104 |||| || || || || || || |||||||| ||||||||| Sbjct 6701578 TCAGGGGCTGGACGGGCAGTGGCGGAGCAGGTTATATTTAAG 6701537 >seq449 Length=1021272 Score = 91.5 bits (100), Expect = 2e-13 Identities = 178/259 (69%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 160120 GGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTA 160179 ||||| || ||| || |||||||||| |||||| | ||| | | |||||| | || Sbjct 935658 GGTGATGGTGCTGCAGCATCCAGTGCAGGTCTCCAGCCCCATAAATGCAGACAGCCCGCT 935599 Query 160180 TGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACT 160239 ||| || ||||||| || || | || || || |||||| || || | || || Sbjct 935598 GGTGGGTTCCAGTGCAAGGTGGATAAGGTGCCCCCTTGTTCACGTCGCCCTCATGGTTCT 935539 Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTT-GTACATCAGG 160298 ||||||||| || || || || || || ||| ||| ||| || || || ||| Sbjct 935538 CCCACTTCACCAATCTAGCAATGGCAGCCACGTCCGAGAAGTCATACTTAGTGTGGAAGG 935479 Query 160299 GGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGG 160358 ||| | | || || | | || ||| || || |||||||| ||||||||||| ||| Sbjct 935478 GGA-CAGAGCCAGGCATCCATGGTGCACGGTGAAGCGTGGCCCAGAGGTGTTCGTCAGGG 935420 Query 160359 CTGTACGTGTCCTTAGACC 160377 ||||| |||| ||| |||| Sbjct 935419 CTGTAGGTGT-CTTTGACC 935402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577155936775680