Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq324 105 1e-17 seq145 98.7 2e-15 seq24 96.9 6e-15 seq257 93.3 8e-14 seq179 93.3 8e-14 seq79 93.3 8e-14 seq71 93.3 8e-14 seq33 93.3 8e-14 seq195 91.5 3e-13 seq178 91.5 3e-13 seq72 91.5 3e-13 seq35 91.5 3e-13 seq108 84.2 4e-11 seq90 84.2 4e-11 >seq324 Length=2564792 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| ||||| || || |||| || | |||||| || || ||||| Sbjct 465133 ATACCACCTCTCAGACGAAGAACGAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCA 465192 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | ||||| || || || Sbjct 465193 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGT 465252 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || |||||||| || || |||| || | ||| || |||||| | ||| Sbjct 465253 GGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGCTGGGCTCC 465312 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||| || || || || || || || |||||||| ||||||||||| Sbjct 465313 ACCTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATTTGCATTTT 465365 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| ||||| || || |||| || | |||||| || || ||||| Sbjct 464905 ATACCACCTCTCAGACGAAGAACGAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCA 464964 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | ||||| || || || Sbjct 464965 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGT 465024 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || |||||||| || || |||| || | ||| || |||||| | ||| Sbjct 465025 GGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGCTGGGCTCC 465084 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || ||||| || || || ||||| Sbjct 465085 ACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATCTGCAT 465134 >seq145 Length=8547294 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||| ||||| || | |||||| ||||||||||| |||||||| || || || || Sbjct 6750905 TGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATC 6750964 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||| || || || | ||||| || || | || || || || Sbjct 6750965 TTGGCCTTGACATTCTCAATTGTGTCCGAGGGTTCAACCTCGAGCATGATGGTCTTCCCC 6751024 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||||||||| || ||||| || Sbjct 6751025 GTGAGGGTTTTTACAAAAATCTGCATCTT 6751053 >seq24 Length=25018996 Score = 96.9 bits (106), Expect = 6e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||||||||| || | |||||| || || ||||| || | || | | Sbjct 5273524 CGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGTGTACGGCCA 5273583 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||| |||||| || ||||| || | | ||| || |||||||| || || || || Sbjct 5273584 TCCTCTAGTTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTG 5273643 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||||||| | ||| || || || | ||| || || ||||| || Sbjct 5273644 TCTTGGATTTTGGTTTTGACATTCTTGATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 5273703 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || ||||| || ||||| || Sbjct 5273704 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATCTT 5273741 >seq257 Length=4087618 Score = 93.3 bits (102), Expect = 8e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||| ||||| || | |||||| ||||||||||| |||||||| || || || || Sbjct 3395554 TGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATC 3395495 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || || || | ||||| || || || || || || || Sbjct 3395494 TTGGCCTTGACATTCTCGATTGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCC 3395435 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || |||||||| || || ||||| || Sbjct 3395434 GTGAGGGTTTTTACGAAAATCTGCATCTT 3395406 >seq179 Length=6907437 Score = 93.3 bits (102), Expect = 8e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||| ||||| || | |||||| ||||||||||| |||||||| || || || || Sbjct 5669906 TGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATC 5669847 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || || || | ||||| || || || || || || || Sbjct 5669846 TTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCC 5669787 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || |||||||| || || ||||| || Sbjct 5669786 GTGAGGGTTTTTACGAAAATCTGCATCTT 5669758 >seq79 Length=15399603 Score = 93.3 bits (102), Expect = 8e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||| ||||| || | |||||| ||||||||||| |||||||| || || || || Sbjct 5413596 TGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATC 5413537 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || || || | ||||| || || || || || || || Sbjct 5413536 TTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCC 5413477 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || |||||||| || || ||||| || Sbjct 5413476 GTGAGGGTTTTTACGAAAATCTGCATCTT 5413448 >seq71 Length=16036057 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||| ||||| || | |||||| ||||||||||| |||||||| || || || || Sbjct 9284354 TGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATC 9284413 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || || || | ||||| || || || || || || || Sbjct 9284414 TTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCC 9284473 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || ||||| Sbjct 9284474 GTGAGGGTTTTTACGAAAATCTGCAT 9284499 >seq33 Length=21904142 Score = 93.3 bits (102), Expect = 8e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||| ||||| || | |||||| ||||||||||| |||||||| || || || || Sbjct 10626813 TGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATC 10626872 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || || || | ||||| || || || || || || || Sbjct 10626873 TTGGCCTTCACATTCTCGATTGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCC 10626932 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || |||||||| || || ||||| || Sbjct 10626933 GTGAGGGTTTTTACGAAAATCTGCATCTT 10626961 >seq195 Length=6191121 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || || |||| ||||| || || |||| || | |||||| || || ||||| || Sbjct 973589 CCGCCCCTCAGACGAAGGACGAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAA 973530 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | ||| || | || || || ||||| || | ||||| | || || || Sbjct 973529 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTCGTCGGGTGGG 973470 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || |||||||| || || |||| || | ||| || |||||| | ||| || Sbjct 973469 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACC 973410 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||||| || || || || || || || |||||||| ||||||||||| Sbjct 973409 TCTAGAGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATTTGCATTTT 973360 >seq178 Length=6940393 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || || |||| ||||| || || |||| || | |||||| || || ||||| || Sbjct 1609570 CCGCCCCTCAGACGAAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAA 1609629 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | ||| || | || || || ||||| || | ||||| || || || || Sbjct 1609630 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGTGGG 1609689 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || |||||||| || || |||| || | ||| || |||||| | ||| || Sbjct 1609690 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACC 1609749 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || || || || || || || |||||||| ||||||||||| Sbjct 1609750 TCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATTTGCATTTT 1609799 >seq72 Length=15011382 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||||||||| || | |||||| || || ||||| || | ||| | | Sbjct 2795386 CGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTACGGCCA 2795327 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||| ||||| | |||| || | | ||| || |||||||| || || || || Sbjct 2795326 TCCTCTAGGTGTTTGTCCACAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTG 2795267 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||||||| | ||| || || || | ||| || || ||||| || Sbjct 2795266 TCTTGGATTTTGGTTTTGACATTCTTGATGGTGTCACTTGGCTCGACCTCAAGAGTGATG 2795207 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || ||||| ||||| || ||||| || Sbjct 2795206 GTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATCTT 2795169 >seq35 Length=21762371 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || || |||| |||| || || |||| || | |||||| || || ||||| || Sbjct 4093759 CCGCCCCTCAGATGAAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAA 4093818 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | |||||| | || || || ||||| || | ||||| || || || || Sbjct 4093819 AGAGTGCGGCCATCGTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGTGGG 4093878 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || |||||||| || || |||| || | ||| || |||||| | ||| || Sbjct 4093879 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACC 4093938 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || || || || || || || |||||||| ||||||||||| Sbjct 4093939 TCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTTACAAAAATTTGCATTTT 4093988 >seq108 Length=12252355 Score = 84.2 bits (92), Expect = 4e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 193140 CTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTT 193199 |||| ||||| | || |||| || | |||||| || || ||||| || | || Sbjct 7287610 CTCAGACGAAGGAGAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAAACAGTG 7287669 Query 193200 CTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCT 193259 | ||| || | || || || ||||| || | ||||| || || || || || || Sbjct 7287670 CGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGTGGGATGCCC 7287729 Query 193260 TCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGA 193319 |||||||| || || |||| || | ||| || |||||| | ||| || || ||| Sbjct 7287730 TCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGCTGGGCTCCACCTCCAGA 7287789 Query 193320 GTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || || |||||||| ||||||||||| Sbjct 7287790 GTGATGGTCTTGCCAGTGAGGGTCTTTACAAAGATTTGCATTTT 7287833 >seq90 Length=14078501 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||| ||||| || | |||||| ||||||||||| |||||||| || || || || Sbjct 1431157 TGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATC 1431216 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || || || | ||||| | || | || || || || Sbjct 1431217 TTGGCGTTGACATTCTCGATTGTGTCCGAGGGTTCAACCTTGAGCATGATGGTCTTCCCC 1431276 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || |||||||| || || ||||| || Sbjct 1431277 GTGAGGGTTTTTACGAAAATCTGCATCTT 1431305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899555797877760