Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq296 87.8 1e-12 seq35 86.0 5e-12 seq141 84.2 2e-11 >seq296 Length=2855797 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| || || || || ||||| ||||| ||| |||| ||| | | Sbjct 781802 AATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 781743 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | || || |||||| || || |||||| | ||| || || Sbjct 781742 CGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCCCCTGACCA 781683 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || |||||||| || | || || | |||||||| Sbjct 781682 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 781623 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 ||| || |||||||| || ||||| |||| || | || |||||| Sbjct 781622 CATCCAGAAGGAGTCCACTCTGCACTTGGTCCTGCGCTT--GAGGGG 781578 >seq35 Length=21762371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 ||||||||||||||||| || || | || ||||| ||||| || | || |||| | Sbjct 4093988 AAAATGCAAATTTTTGTAAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTGGAGCCC 4093929 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||||| ||| | || || ||||| |||||||| ||| | || || Sbjct 4093928 AGCGATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCACCCGAC 4093869 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | ||| || || |||||||| || | | || | | |||||| Sbjct 4093868 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGACGATGGCCGCACTCTTTCTGACTAC 4093809 Query 107733 AACATTCAAAAGGAGTCTACGTTGCAC 107759 ||||| || || ||||| || ||||| Sbjct 4093808 AACATCCAGAAAGAGTCAACTCTGCAC 4093782 >seq141 Length=8851405 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/233 (68%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 107551 TTAA-AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 |||| |||||| || ||||| || || || || ||||| ||||| ||||| || ||| Sbjct 8265335 TTAACAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCGTTGAGGTCGAG 8265276 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 | |||| || | | | || || ||||| || || |||||| | ||| Sbjct 8265275 CCCAGCGACACCATTGAGAATGTCAAGGTGAAGATCCAAGACAAGGAAGGCATCCCCCCT 8265216 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 || |||||||| || || | ||| || || |||||||| || | || || | ||| Sbjct 8265215 GACCAGCAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGGCGCACCCTGTCTGAC 8265156 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| || || ||||| || ||||| ||||| | | || ||||||| Sbjct 8265155 TACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTTCGCCTGAGAGGGGG 8265103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398834176025152