Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq200 210 4e-49 >seq200 Length=5741990 Score = 210 bits (232), Expect = 4e-49 Identities = 481/719 (67%), Gaps = 10/719 (1%) Strand=Plus/Plus Query 58100 GATAAACGTGTAGATAATTGGTTGTTAATGAATTCTCCTATTCCTACGATATGTATAAGT 58159 |||||||||||||| || ||| || ||| | || ||| || || | |||| ||| Sbjct 266525 GATAAACGTGTAGAAAACTGGCCTTTGATGCAGTCCCCTTGGCCCACACTGAGTATCAGT 266584 Query 58160 ACTTTGTATCTAATCATCGTCTGGTTAGGACCTAAATGGATGAAAACTAGAAACGCGTTT 58219 || |||| || | |||| ||| | ||||| | |||||||| | || | | ||| Sbjct 266585 ACCCTGTACCTTCTGTTCGTGTGGCTGGGACCGACGTGGATGAAGAACCGAGAACCTTTT 266644 Query 58220 AATAT-CAGATGGTTGTTGGTCTTATATAATTTTTCTATGGTATTTCTAAACTTTTATAT 58278 | || | ||||| | || | | ||||||| | ||| || || || ||| ||| Sbjct 266645 CAGATGCGCTTGGTTCTCATTC-TCTGTAATTTTGGCAGGGTCTTGCTTAATCTTTTTAT 266703 Query 58279 ACTAAAAGAACTAT---TTGTATCATCTACAGCCAAAGGCTATAGTTATGTTTGTCAACC 58335 | | ||| ||| | | ||||| || || ||| ||||| |||||||| || Sbjct 266704 CTTCAGAGAGTTATTCATAGGATCATATAATGC---AGGATATAGCTATGTTTGCCAGAG 266760 Query 58336 TATAGATTATTCAGATAACGTTTACGAGGTTAGGATAGCCAGAGCATTATGGTGGTACTA 58395 | | |||||||| ||||| ||| || || |||||||| | | |||||||||| Sbjct 266761 TGTGGATTATTCCGATAATGTTCGTGAAGTCAGGATAGCTGCTGGTCTGTGGTGGTACTT 266820 Query 58396 TATATCTAAAGGGATAGAATACTTAGATACAG--TGTTTTTCATACTTAGGAAAAAGTTT 58453 | | |||||||| | |||| ||||| | || | ||||| ||||| || || || Sbjct 266821 TGTTTCTAAAGGAGTTCAATATTTAGACAGAGTATTTTTTTTATACTAAGAAAGAAAAAC 266880 Query 58454 AATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTTACTTTAGGATGGGTA 58513 | || || || || ||||| |||||||||| ||| |||||||| || | ||| Sbjct 266881 CACCAAGTCTCTTTCCTTCACGTGTATCATCATTGTACAATGTTTACATTGTGGTGGACT 266940 Query 58514 GGTATTAAATGGTTTGCAGGAGGTCAGGCATTTTTCGGCGCTCAGTTGAATTCTTTTATC 58573 || ||||| ||| | ||||| || || |||||||| || || ||| ||||||| || ||| Sbjct 266941 GGAATTAAGTGGGTAGCAGGGGGACAAGCATTTTTTGGAGCCCAGATGAATTCCTTCATC 267000 Query 58574 CATGTTATTATGTATAGTTATTATGGTATGGCGGCGTGTGGACATATGTTTAAAAAGTAT 58633 ||||| |||| | | ||| ||||| | | | || ||| | | || | || ||| Sbjct 267001 CATGTGATTACGCACTCTTACTATGGCTTAACTGTGTTTGGCCCATGGATTCAGAATTAT 267060 Query 58634 TTATGGTGGAAGCGTTACCTTACTATAATGCAATTGGTACAATTCCATATAGCTATAGGA 58693 | |||||||| | ||||| || || |||| |||| || ||||| | | | || Sbjct 267061 CTTTGGTGGAAACTATACCTGACCATGTTGCAGCTGGTTCAGTTCCACGTGACCACTAGA 267120 Query 58694 CATACCGCTATGTCCATTTACATAGATTGCCCGTTTCCAAAATGGACGCAATGGTCAGTT 58753 || || || ||| ||| | || | |||||| || ||||||| ||| ||| | | Sbjct 267121 CACACAGCATCGTCTCTTTGGACTGACTACCCGTTCCCCAAATGGATGCACTGGGAAATG 267180 Query 58754 ATCATCTATTCTATTACTTTTATATTATTGTTTGGTAACTTCTATTTTAGAACATACAA 58812 || |||| | || | || ||||| | ||| |||||||||| | | |||||||| Sbjct 267181 ATTGTCTACGCCATCAGCTTCATATTCCTCTTTCTTAACTTCTATATGTGGACATACAA 267239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903312186132480