Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq108 340 2e-88 seq165 167 3e-36 seq13 152 6e-32 >seq108 Length=12252355 Score = 340 bits (376), Expect = 2e-88 Identities = 635/930 (68%), Gaps = 7/930 (1%) Strand=Plus/Plus Query 162056 GCACCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTT 162115 || |||| | ||||||| | || ||| || | |||||||| || || | ||| | Sbjct 7341548 GCTCCAGAGCTTTATGTCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCGACAT 7341607 Query 162116 CCTCATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCC 162175 | || |||||||| || |||| ||||||| | | || |||| || || || | Sbjct 7341608 CGGTGTCAAACTTGTTGGCAAACAAGTGATGCTGGCGCAGCA---TCCACTTCAGGTCTC 7341664 Query 162176 CCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCC 162235 | | ||||| |||||||| || ||||| ||||| |||||||| || || || |||| | Sbjct 7341665 CAGCACCGAAGACGCACACAGAGCGCACATGCACCCCGCTGCAGGGTGGGTATGGGGCGC 7341724 Query 162236 CATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGT 162295 | | | || || ||||| | || |||||||| ||||| | ||| |||||||||| Sbjct 7341725 CCTTGGTGACGTCGCCCTCAAAATAGTGCCACTTGACGAAGCGCACGATGGCCTGCATGT 7341784 Query 162296 CGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTA 162355 | || |||||||||| | || | || ||||| || |||||| ||||| | Sbjct 7341785 CCGACAAGTCGTACTTGGGGCTAGCGGGGAGCGCACCAGGGGCATCCGGCATCCTCTGGA 7341844 Query 162356 GAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCC 162415 || ||||| || | || || || || || || ||||| | ||||||||||| | Sbjct 7341845 TGGTGGCCCAGAGATACTCATCGGGGCTGTAAGTGTCCTTGGCCCACTCCATGAGATGGT 7341904 Query 162416 TGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGC 162475 || | | || | |||| |||| |||||| |||| | || | || || |||| Sbjct 7341905 GGATCCGCTCATTTTCAAGAACATAAGCCACGTAGCTCCTGCTGACCACGAAATAGGCGC 7341964 Query 162476 TACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535 | || || || | ||| | | || || || || ||||||| |||||||| || | Sbjct 7341965 TGCCGGAGAAGATGGGAGTTTGGATGGGCGGCCGCCCTTTGTCAGTCCCCGTGTTCACGA 7342024 Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595 ||| || | ||||| | | | |||| ||||||| || |||| ||| | | | Sbjct 7342025 GCATCCCATTCACGACTTCATAACGCTTCTTCCACCTTTCCTCCTTATTGGCGGGCATTT 7342084 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 ||| || || ||| |||| ||| || || ||| |||| || || ||||| || | Sbjct 7342085 TTTCCGTTTCCAGATTGTTTTCCCCCATCAGGGACTTGAGCTTGCGGACGATCTCCAGGT 7342144 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 | || |||| || || || |||||||||| || || | || ||||| | ||| Sbjct 7342145 TCGTTTTAATCGGGAAATCCATGCCGCAGAGGTTGATGAGGTACTTCCAGGTGGTGCTCG 7342204 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 || || ||| ||||| | || || || ||||||||||| || ||||| ||||| |||| Sbjct 7342205 TTCTGTGCAGGTCCTGCATGCAATTGAGGTCGGCCTGGACCCGGCTCCAGGACGCATACA 7342264 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835 | |||||||||| | |||| || || || ||| ||||||| || | || ||||||| Sbjct 7342265 CCACGCTCTCCAGCTGGCTGGCCACGAACACGTTGCCGAAACAGGACGCAATGCCCATCA 7342324 Query 162836 CGG--CCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893 | | || || | ||| |||| ||| | |||||||||| ||| || | |||||| Sbjct 7342325 CTGCACCCAAGAAAGAATC--ATCCGATTTTTTGTCTACGTGTATGCAATAGAAATTCTG 7342382 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 ||| |||||||||||||| | || || | ||| || || || ||||| ||||| || Sbjct 7342383 AGGCATGTAGATGGCCCTCAAGAGCCTGTCCAGCATTTCGATTTTGTGGTGAACCACTAT 7342442 Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||| || |||||||| || ||||| || Sbjct 7342443 GGAATATGCAATGGGGAATTCCGCCTCTTC 7342472 >seq165 Length=7787208 Score = 167 bits (184), Expect = 3e-36 Identities = 232/325 (71%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 |||| || || || |||| || || || || || || | ||||| ||||| || | | Sbjct 6697545 CATAAAGCGTGAGGCAGGCTTTCCCTGAGATCTTCCCAGCGCCAAATGTATTGAAGAGGC 6697486 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 ||| |||| ||||| ||||||| |||||| |||||||| || | || || | ||| Sbjct 6697485 ACAAGTAACATCCTTCATCCTCCAGGGTGGTATTCCAAAAGGTTATGGTTGAGTCGTTGA 6697426 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | || ||||||| || |||||| | | |||||| | ||||| || || | Sbjct 6697425 GTCCCAGGTAGGTGATGTTCAACCTGTCCTTAAAGGCAGGCTGAATCACAACCCCATGGT 6697366 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||| | ||| ||||||| | ||||| | || | | || ||||||||||| || | Sbjct 6697365 TCTTGCTGTAAGTGACCATGTTCACCGGGCTTGAAGGCCTCATTTTCTGCCACGTCACAA 6697306 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | || || | ||| | ||||||| || |||||||||| || | | Sbjct 6697305 TCAAGACTTCCTGGTAAGTGTTCAGAAAACATCTTAGGGACGCAGGTGTGTGCAGTGGCT 6697246 Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095 | ||||| || || || || || || Sbjct 6697245 CTCTTTCATCCTGGGTCACTACTTG 6697221 >seq13 Length=33189687 Score = 152 bits (168), Expect = 6e-32 Identities = 394/586 (67%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||||| || | |||||| |||| | || || | | | Sbjct 21532938 TCCAGTTAAAGTAACTGAGATATAGCTTATTGTTTTTGTCGACTTCCTTCAGATACCTTG 21532997 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | ||||| | || || |||| || | ||| |||||||||| ||| | || | |||| Sbjct 21532998 CTAGTTCACTGGGTGAGTTGTAATCTTCCACATGAATGAAAGAATCTGCTGGAATATAAT 21533057 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || ||||| || |||| || || || | ||||| | || |||| | || Sbjct 21533058 TCTCATAGTTCTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCCAACAAAGCAT 21533117 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||||| |||||||| ||||| || |||| | ||||| ||||| | || || |||| Sbjct 21533118 TATAGAGCTTTTCGGTGATATAATCTTTGTGGATTGAGTTTTCAAAGGAAAGGTAAAATT 21533177 Query 177127 TACAGGAAGATAGTAG-CGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTC 177185 | || ||||||| ||| || || || | | ||| || ||| ||||| | | | | Sbjct 21533178 TGCAAGAAGATA-TAGTAGGAATCAAATTCTTATCATTTACATATTCTCCAAATGCTTGT 21533236 Query 177186 CCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGTG 177244 || || ||| || || ||| ||| || || || ||| || || || ||| | || Sbjct 21533237 CCATAGGTATGGATTTCAATGCTTTTGCTCAGTTCATTGTAATA-CTTGACTCTGGCATG 21533295 Query 177245 GTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGAT 177303 || ||||| || || || ||||| || || || || |||||||| || || | Sbjct 21533296 CTCAGGATTCCAGTTACTTACAACCCAACACACCAA-TTTCTCTTTGCTTGGCAC----T 21533350 Query 177304 TC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 || |||| || | || | | || | ||| | | ||||| ||||| || ||||| || Sbjct 21533351 TCAAATAC-AAAGGAGCTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 21533409 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419 ||| || | ||| || | || || ||||| |||| || |||| || |||| ||| Sbjct 21533410 GTCACGGCGGTAAGTCAGAGTCAGGTTGAACAGGTGCTCAATACCACTCTTTTG--GGGA 21533467 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGG 177465 ||| | | || || |||||||||||||| ||||| || || |||| Sbjct 21533468 GTGTGAGTTGGTGACTCTAAGTTCATCCAAATCCATTTCTGGAAGG 21533513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578368603852800