Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq165 226 3e-54 seq316 163 3e-35 seq63 141 1e-28 seq121 118 1e-21 seq91 118 1e-21 seq132 109 6e-19 >seq165 Length=7787208 Score = 226 bits (250), Expect = 3e-54 Identities = 242/320 (76%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || || |||||||||||||| || | || ||| |||| || || ||||| | ||| | Sbjct 6697221 CAAGTAGTGACCCAGGATGAAAGAGAGCCACTGCACACACCTGCGTCCCTAAGATGTTTT 6697280 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||| | |||| ||||| || ||||||| || ||||||||||| | ||| | | || Sbjct 6697281 CTGAACACTTACCAGGAAGTCTTGATTGTGACGTGGCAGAAAATGAGGCCTTCAAGCCCG 6697340 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 | ||||||| | |||| ||||| |||| ||||| ||| | ||||| || | ||||||| Sbjct 6697341 GTGAACATGGTCACTTACAGCAAGAACCATGGGGTTGTGATTCAGCCTGCCTTTAAGGAC 6697400 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 | | | ||||||||| | || |||||| | |||||||||| || ||||||||||||||| Sbjct 6697401 AGGTTGAACATCACCTACCTGGGACTCAACGACTCAACCATAACCTTTTGGAATACCACC 6697460 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || || || ||| |||||||| || || ||||| ||||||| ||||| Sbjct 6697461 CTGGAGGATGAAGGATGTTACTTGTGCCTCTTCAATACATTTGGCGCTGGGAAGATCTCA 6697520 Query 171369 GGGGTGGCCTGCCTCACCCT 171388 ||| ||||||||||| || Sbjct 6697521 GGGAAAGCCTGCCTCACGCT 6697540 >seq316 Length=2809289 Score = 163 bits (180), Expect = 3e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 1685907 CTTTAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 1685966 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || ||||||||||||||||| || ||||||||||||||||| || ||||| || || | Sbjct 1685967 AGGCACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGACAGGAGAGTTCACCATT 1686026 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| ||| ||||| || ||||| ||||| Sbjct 1686027 CACCACGTAGAACTGGCAAAGGGCATGGCAGGGTGGCAGGGCCAT 1686071 >seq63 Length=16905340 Score = 141 bits (156), Expect = 1e-28 Identities = 130/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| ||||||||||||||||| | |||||| ||||| ||||| Sbjct 6590258 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCAAATTTTACCTGGAGATGGTGA 6590199 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || ||||| ||||| ||||||||||| |||| Sbjct 6590198 TGCCGCAGGCAGAGAA------------TGAGGGCCCAGACATCAAGGAGCATGTGAACT 6590151 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||||| ||||| ||| |||| | ||||||||||||| ||| Sbjct 6590150 CCTTGGGGGATAAGCTGAAGGCCCTCCGGCTGAGGCTGCGGCGCTGT 6590104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||| | || ||||| ||||| || |||||||||||||| || || || ||||||| Sbjct 6587992 AGCTCCAAAAGAAAGGTGTCTACAAGGCCATGAGTGAGTTTGACATCTTCATCAACTACA 6587933 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 6587932 TAGAAGCCTACATGACAA 6587915 >seq121 Length=10290576 Score = 118 bits (130), Expect = 1e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || | ||||| ||||||| |||| ||||| || Sbjct 4455547 GTACTCCTTGGTGTTTGTCATTGGCCTGGTGGGCAACATCCTGGTGGTCCTGGTCCTGAT 4455606 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||| |||||| | |||||||| ||||| ||| ||||||||||| || || Sbjct 4455607 ACAGTACAAGCGGCTCAAAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCCGA 4455666 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 ||||| | ||||||| || ||||||||||| Sbjct 4455667 TCTGCTCTTCCTTTTCACGCTGCCCTTTTGGAT 4455699 Score = 111 bits (122), Expect = 2e-19 Identities = 207/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 || || |||||||| | |||| || | |||||| ||||| | | |||||| Sbjct 4370038 TATTCCCTGGTGTTCATCGTTGGCCTGTTGGGCAATCTGGTGGTGGTGGTGATCCTCACC 4369979 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || |||||| |||| |||||||||||||||| | |||| ||||| ||||| || |||| Sbjct 4369978 AAATACAAGCGGCTGGGGATCATGACCAACATTTACCTGCTCAACTTGGCCATTTCTGAC 4369919 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGGG 8790 |||| | | |||| || || || |||||||||| | | | ||||| | Sbjct 4369918 TTGCTCTTTCTAGTCACACTTCCATTCTGGATTCACT--ATGTGGAGTGGAAC----AAG 4369865 Query 8791 TGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTAC 8850 |||| | | ||| |||||||||||| | ||| |||| || ||| ||||| Sbjct 4369864 TGGGCCTTTGGCCAGTGCATGTGTAAGTTCTTCACGGGGCTTTATTACCTGGGCTTGTAC 4369805 Query 8851 AGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGCG 8910 || || || | || ||| ||||| |||| | |||||||| || || | ||| |||| Sbjct 4369804 AGTGAGATCTTCTTCATCGTCCTGCTGACCATCGACAGGTACCTGGCCATCGTGCACGCC 4369745 Query 8911 GTG 8913 ||| Sbjct 4369744 GTG 4369742 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||||||||| | ||| | ||||||||||||| | | ||||| ||| ||||||||| Sbjct 4456263 TGGACATGGCCATACAAGTGACAGAGATGATCGCCTTCTCACACTGTTGCATCAACCCCG 4456322 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTCA 9425 ||||||||| ||||||||||| | ||||| || |||| || Sbjct 4456323 TCATCTACGTCTTTGTGGGCGAGAGGTTCCGGAAGTACCTCCA 4456365 >seq91 Length=13036445 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 |||| ||||| ||| ||||||| || |||||||| || ||||| |||| ||||| | Sbjct 5714576 TACTTGCTGGTCTTTCTGTTTGGCCTGCTTGGCAATTCCATGGTGGTCCTGGTCCTGCTC 5714517 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 |||||||||||||||| | |||||| || ||| |||| ||||||||||| | ||| Sbjct 5714516 AAGTACAAGAGGCTCAAGTCCATGACTGACGTCTACCTGCTCAACCTGGCCATCTCCGAC 5714457 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | ||| |||||||||| ||| Sbjct 5714456 CTGCTCTTCGTCTTCTCCCTCCCCTTCTGG 5714427 >seq132 Length=9596125 Score = 109 bits (120), Expect = 6e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 146970 AAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCT 147029 ||||| || ||||| ||||| || ||| ||| |||| |||||||||| | |||| Sbjct 8761747 AAAGTTACCTGGCTTTAGGCCTGTGGTGTGTGCCGTCATGCAGGTGAGCAGGGCACAGCT 8761806 Query 147030 GGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGA 147089 ||| || ||||| | ||||||||||||||||| || ||| ||||||| |||||||| || Sbjct 8761807 GGCAATATTGAAAAGCACCCCCAGGCCCATGTCTCCGGACTTCTGGTAAAGCTGGCAGGA 8761866 Query 147090 GAGCTCCCCGTCGGCCACGTAAAACTGGCA 147119 || | | ||| ||| ||| || ||||| Sbjct 8761867 CAGGGCACTGTCCACCATGTAGAAGTGGCA 8761896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583424049715200