Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq40 132 7e-26 >seq40 Length=21071559 Score = 132 bits (146), Expect = 7e-26 Identities = 208/298 (70%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 213926 CACATCTATGGCGAGACGCTGGAAAAACAGCACCAGTTGCGTCTGTTCAAGGACGGTAAA 213985 || || ||||| || || ||||| | |||||| | ||| || |||||||| || ||| Sbjct 16839212 CATATTTATGGTGAAACTCTGGACAGACAGCATAAACTGCACCTTTTCAAGGATGGAAAA 16839271 Query 213986 ATGAAGTACCAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTG 214045 |||| || ||||| |||| || || | || ||||| || ||||||||| | | || Sbjct 16839272 CTGAAATATCAGATGGTTGATGGAGAGATGTATCCTCCCACAGTCAAGGAGACTCAGGTA 16839331 Query 214046 CATATGGTTTACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATG 214105 | ||| | ||| || | ||| || || | | || || || |||| | || | Sbjct 16839332 GACATGATGTACCCTCCAAACGTACCAGAGCACGTTCGCTTTGCGGTGGGGCAACAGGTC 16839391 Query 214106 TTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGG 214165 ||||| || ||||| ||| | ||| |||| |||| | ||||| || || || ||| | Sbjct 16839392 TTTGGTCTGGTGCCGGGTCTAATGATGTATGCCACCAATTGGCTTAGCGAACATAACCGA 16839451 Query 214166 GTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 || || || ||||| ||| | |||||||| | || | | || || ||||||||||||| Sbjct 16839452 GTGTGTGATGTGCTTAAAGAGGAGCACCCCGGATAGGATGATGAGCAGCTGTTCCAGA 16839509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723261521848320