Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq94 196 4e-45 seq402 120 2e-22 seq46 116 3e-21 seq316 111 1e-19 seq223 107 2e-18 seq216 91.5 1e-13 seq202 91.5 1e-13 seq61 86.0 5e-12 >seq94 Length=13213440 Score = 196 bits (216), Expect = 4e-45 Identities = 409/595 (69%), Gaps = 36/595 (6%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||||| ||||| || |||| |||||||| ||||| |||| || ||||| ||||| Sbjct 4998404 TTTGTCGTTTTTCCTGTTGAATACCATGACATTTGGCAGATGTCTAAGAAAGCTCAGGCT 4998345 Query 43760 TCATTTTGGA-CAGCAGAAGAAGTTGATTTGACTAAAGAC--TTAGCACATTGGATTGCA 43816 || ||||| | || || | || ||||| | | |||||| ||||||| ||| || Sbjct 4998344 TCCTTTTGAAACACCA-AGGAGATTGATCTTTCCAAAGACATTTAGCAC--TGGGAAGCC 4998288 Query 43817 TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGAC 43876 | || | | || | | |||||||| ||| |||| || |||||||| || || Sbjct 4998287 CTTAAGTCTGAGGAGAGTTACTTTATATCCCATGTTCTGGCCTTCTTTGCTGCAAGTGAT 4998228 Query 43877 GGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGC 43935 || | ||| |||||||| |||| |||||| |||||||| || ||||| |||||| Sbjct 4998227 GGCACAGTGAATGAAAACCTGGTGGAGCGGTTTAGCCAAGAAGTCCAGATTAC-AGAAGC 4998169 Query 43936 ACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCT 43995 || ||||| ||||| || ||||||||||| ||||| || ||||| |||||||| ||||| Sbjct 4998168 CCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCT 4998109 Query 43996 TCTGATAGATACGTACATCAAAGAT----GGGCACGAGAAGCATCGATTGTTTAATGCGA 44051 || || || |||| |||||| || | | ||| || | | ||||| | Sbjct 4998108 CCTTATTGA----CACATTAAAGATCCTAAGGAATGGGAA-TTTC---TCATCAATGCCA 4998057 Query 44052 TAGAAACAGT-ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGG-------AT 44103 | |||||| | |||| | | || | ||||||||||||| | ||| | Sbjct 4998056 TTGAAACAATGCCCTGTG-TAAAGAAGGCAGCAGACTGGGCCTTGCGTTGGGCTGGGAAC 4997998 Query 44104 AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163 ||| |||| | | | ||||| | | || || ||||||| |||||||| | | Sbjct 4997997 AAA--GAAAT--TACCTACGGAGAGAGTGTCGTAGCCTTTGCAGCAGTGGAAGGAA---T 4997945 Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223 ||| || | || ||||| | ||||| ||| | |||||| ||| || ||||||| | Sbjct 4997944 CTTCTCCAGTTCTTTTGCATCAATATTCTGGCTCAAGAAATGAGAACTGGTGCCTGGCCT 4997885 Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCT 44278 || ||||| | ||| | | || | |||||||||||||| || || |||||| Sbjct 4997884 CACATTTTCCAGTGAACTTACTAGCAGAGATGAAGGCTTACACTGTGACTTTGCT 4997830 >seq402 Length=1414927 Score = 120 bits (132), Expect = 2e-22 Identities = 361/548 (66%), Gaps = 22/548 (4%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 || |||||| || || || ||||| || || || || ||| || | || || || Sbjct 284474 ATAGGAGGACTGGACAAGGAATTTTCCGATATATTCCGCCAAGCGTTCGCTTCCCGAGTA 284533 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 ||| || | || | | | || |||| || |||||||| || | |||||||| Sbjct 284534 TTTCCTCCCGAGATTGTGGAGCAGATGGGTTGCAAACATGTCAAAGGCATCCTGCTTTAT 284593 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACA 19419 || || || || ||||| ||||| | | || | | || | || ||| | || Sbjct 284594 GGACCCCCAGGATGTGGTAAAACTCTTCTGGCTTGCCAGATTGGCAAGATGTTAAATGCA 284653 Query 19420 AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 | | | || ||| | || ||||| || |||||| | ||||| ||||| || | || Sbjct 284654 AGAGAGCC---CAAGGTGGTCAATGGGCCAGAAATCCTTAATAAGTATGTGGGAGAGTCA 284710 Query 19480 GAAGAAAA----TGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA-ACGTTTAG 19534 || | || |||| || | |||||||| |||||||| || || | | | || | Sbjct 284711 GAGGCCAACATTTGTAA-AC---TCTTTGCTGATGCTGAAGAGGAGCAGAGGAGGCTTGG 284766 Query 19535 GGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAA 19594 || || ||| ||||||||| || || | |||||| | || || ||||| ||||||| Sbjct 284767 TGCT-AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAAA 284825 Query 19595 GAGGTTC--TGGT--GTA--AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAA 19648 ||| ||| ||| | ||||| || |||||||| ||||| || || | ||| | Sbjct 284826 TAGGGAGCATGGCAGGTAGCACAGGAGTTCACGACACTGTCGTCAACCAGCTGCCGTCCA 284885 Query 19649 AATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGG 19708 || | ||||| || | |||||||| || || |||| ||||||||||| | |||| || Sbjct 284886 AAATTGACGGGGTGGAGCAACTGAACAACATCCTAGTGATTGGCATGACCATCAGACCGG 284945 Query 19709 AATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACT 19768 | | |||||| || | | |||| || ||||| ||||||| || || || Sbjct 284946 ATCTGATAGACGAAGCTCTCCTTCGACTTGGAAAATTGGAGGTAAAGATGGAGATCGGCT 285005 Query 19769 TACCCGAT 19776 |||| ||| Sbjct 285006 TACCAGAT 285013 >seq46 Length=20359300 Score = 116 bits (128), Expect = 3e-21 Identities = 287/429 (67%), Gaps = 10/429 (2%) Strand=Plus/Minus Query 77243 GCTCCCTCTCGTGCCAGCCGGTCGGCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTGGG 77302 ||||| |||| ||| | | || || || ||||||||| | |||| | || || || Sbjct 11337078 GCTCCTTCTCTTGCTAATCTATCAGCTTCTTCATTGCCTCTAAATCCCGAATGACCAGGA 11337019 Query 77303 ATGTGCAGCCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCC 77362 ||||||| ||| || |||| || | ||| || |||| | |||||| ||| Sbjct 11337018 ATGTGCATCCATCGAA--TCCATGCCCTGGGTAAGTCTATCAAGCTCAACAAAGTCCTCC 11336961 Query 77363 TTGTTGACAAC---TGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTA 77419 ||||||| || | |||| || || |||| || || | |||||| ||| Sbjct 11336960 TTGTTGATTACCTCTTTCCCTGTGCT-TGTTT--TCCATCCATTTTTCTTCCAACCTTTA 11336904 Query 77420 ACCCACTTAGTCACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTG 77479 ||||| ||||| | |||||| || || ||||| |||||||| || | |||| ||| | Sbjct 11336903 ACCCAATTAGTTATACCATTTATAGTAAACATACTGTCTGTATATAGAACCAACTTAGTT 11336844 Query 77480 ATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCGCGCTGG 77539 || | | | ||||||| | |||||| | || || || ||||| || | ||| Sbjct 11336843 ATGTCTTGAGTTTTTGCTTGTTCAATGGCTTTGCAGGCTGCATGAATTTCTGCTCTTTGG 11336784 Query 77540 TTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAGCGGGTGATTATAACCCCAATAT 77599 ||||||||| |||| ||||| | ||||| | || || |||||||| Sbjct 11336783 TTTGTCTGTCGCCCAGAAAGTCTAATGCCTACATTTAAAGGATGGCCTGGCCCCCAATAA 11336724 Query 77600 ACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGATA-AGCAACAGCCGTCAGTGTA 77658 || ||| | || ||||| || |||| |||| ||| || |||| ||||| |||||||| Sbjct 11336723 ACACCACTTCCTGCTCGCGCCCTTTTCCGTCC-ATTGCTAGAGCAGCAGCCATCAGTGTA 11336665 Query 77659 GACCACCAC 77667 |||||||| Sbjct 11336664 AACCACCAC 11336656 >seq316 Length=2809289 Score = 111 bits (122), Expect = 1e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTC 41107 |||||| ||||||| || ||| | || ||||| ||||| ||||||||||| || Sbjct 1686072 GATGGCCCTGCCACCCTGCCATGCCCTTTGCCAGTTCTACGTGGTGAATGGTGAACTCTC 1686013 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 ||||| |||| || || ||||| |||||||| || ||||| || || ||||| || || Sbjct 1686012 CTGTCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGGGTGCCTTTCAACATTGCCAG 1685953 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACAC 41198 || || |||||||| || ||||| |||||| Sbjct 1685952 CTACGCCCTGCTCACCTACATGATCGCACAC 1685922 >seq223 Length=5023716 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||||| || ||||| || |||||||| || || |||||| Sbjct 3965691 GGAGAACGTGTTGTAGCCTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCG 3965750 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | |||||||| ||||| | Sbjct 3965751 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTT 3965810 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 3965811 ATTAGCAGAGATGA 3965824 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 |||||| |||||||| || | ||||||| || ||||| ||||| || ||||||||| Sbjct 3962524 CGGTTTAGCCAAGAAGTCCAGGTTACAGAAGCTCGCTGTTTCTATGGCTTCCAAATTGCC 3962583 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || ||||| |||||||| ||||| || || ||||| || || |||||| Sbjct 3962584 ATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGATACTTATATTAAAGAT 3962640 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| ||||||||||||||||| |||||||| ||||||| || || ||||| ||| Sbjct 3966674 GTAGAAAATCCGTTTGATTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 3966733 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || ||||| || || |||||| ||||| || ||| Sbjct 3966734 GAGAAGCGCGTAGGCGAGTATCAGAAGATGGGAGTGATG 3966772 >seq216 Length=4988960 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/162 (73%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||||||||| Sbjct 2527018 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAAAGAGGG 2527077 Query 19600 TC--TGGT--GTA--AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||| ||| | ||||| || |||||||||||||| || || ||||| ||| | Sbjct 2527078 AGCATGGCAGGTAGCACAGGAGTTCACGACACTGTTGTCAACCAGCTGCTGTCCAAAATT 2527137 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 ||||| || | |||||||| || || |||| ||||| ||| Sbjct 2527138 GACGGGGTGGAGCAACTGAACAACATCCTAGTGATTGGTATG 2527179 >seq202 Length=5697000 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 ||||| || ||| | ||||| || || ||||| ||||| ||||||||| || || ||| Sbjct 3883113 CAAGAGGTCCAAGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTTATCGAGAAT 3883172 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||| || |||||||||||| | || |||||||| || |||| |||| Sbjct 3883173 GTTCACTCAGAAATGTACAGTTTGCTAATAGATACTTATATCAGAGAT 3883220 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||||||||||||||| ||||| || ||||| |||||||| |||||||||||| Sbjct 3905973 AATCCCTTTGATTTTATGGAAAACATTTCATTAGAAGGGAAAACAAATTTTTTTGAAAAA 3906032 Query 44555 CGCGTTGGAGAATATCAGCG 44574 || ||| || |||||||| Sbjct 3906033 CGAGTTTCGGAGTATCAGCG 3906052 >seq61 Length=17507673 Score = 86.0 bits (94), Expect = 5e-12 Identities = 270/412 (66%), Gaps = 16/412 (4%) Strand=Plus/Plus Query 87118 AAGAGATCGATAATATCCATGTAAATGTGGATAAATGCTACAATGTATTCGTCAGGAGAA 87177 || |||| ||| | ||||| ||| | | ||| ||| | || || || ||||| || Sbjct 8865013 AACAGATTGATGACATCCAAGTAGAGGCTGATGGCTGCCAGTATATACTCTTCAGGTGAC 8865072 Query 87178 AACTGTTTCATTAGCTTATGGGTGTCATAAATTATAAAGCCACAGAAAACAACAGCCCCA 87237 | | | ||| || ||||||||||| || || ||||| ||||||| | || || Sbjct 8865073 AGCCTATGCATCAGTGAGTGGGTGTCATAGATGATGAAGCCGCAGAAAAGCAGGGCTCCC 8865132 Query 87238 AACCCAGAAATAACTAAATCTGCGCTATCACTGTTATAGAACAATTGTATTAACATTGCA 87297 ||| || || || || | | || | | ||||||| ||| |||| | | | Sbjct 8865133 CCAGCAGCAAAGACCAACTC--CAGTGTCTC-GCTATAGAAGAATAACCTTAAGAATCC- 8865188 Query 87298 ATGACAAAGATCAATATGCAT------GCAAACAATCCTGCTCCCAGTTTACTAAAATCT 87351 |||||| | ||| || || | ||||| |||||||| | ||| ||||||||| Sbjct 8865189 -TGACAAGCA-CAAAATCCACAAAACCGTAAACAGCCCTGCTCCAAATTTGCTAAAATCT 8865246 Query 87352 TTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCAAACACAGCACATGTTaa--aaaaa 87409 ||||| || || | || || | ||||||||| ||| || ||| ||| || |||| Sbjct 8865247 TTCTTTGACTGTAGAGTGTATGCAGTCAAGCCAAGAAATACTGCAGTTGTCAATGTAAAA 8865306 Query 87410 GCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCAAAGTTGTGGCCACAGAAACTGCTT 87469 || |||||| | | || |||||||| || | | ||||||||| | |||| Sbjct 8865307 GC--TTGTAGAACAATATAGACATCATAGAAAGTAACAACAATGGCCACAGTCAGAGCTT 8865364 Query 87470 CCATGAATGTAAATGCAACCAATAGGTAGCTATTAACGGGTCGTTTGTGTCT 87521 ||| | ||||||| ||| | ||||| ||||| ||| | || ||||| Sbjct 8865365 CCAATAGTGTAAATCCAAAAAGCAGGTATAAATTAAGGGGATGCTTATGTCT 8865416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397413527851840