Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq300 82.4 6e-11 seq237 82.4 6e-11 >seq300 Length=2956037 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| ||| | || || |||||||| || |||||||| | | || | Sbjct 1654707 CGCAGCACCAGATGCAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGTGTACGGCCA 1654766 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || || ||||| || || | || |||||||| || || || || | ||||| || Sbjct 1654767 TCCTCTAGTTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGAGGGATGCCCTCCTTG 1654826 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || ||| ||| | | | || | ||||| ||| || || || ||||| || Sbjct 1654827 TCATGAATTTTGGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 1654886 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 1654887 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1654921 >seq237 Length=4246959 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 27016 TATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGT 27075 || |||| || |||| |||| |||| ||| | || || ||||| || || ||||||| Sbjct 3493994 TAATGCCACCACGCAGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGT 3494053 Query 27076 CGCTCA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCC 27134 | | ||| || |||| || |||||||| || || | || ||| |||| || || Sbjct 3494054 CTGAGAGTGTACAGC-CGTCCTCTAGCTGTTTGCCCGCAAATATCAGATGCTGCTGGTCA 3494112 Query 27135 GGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCT 27194 | | | ||||| || || ||| ||| ||| | | || | ||||| ||| Sbjct 3494113 AGGG--ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGC 3494170 Query 27195 TCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || ||||| || | ||||| ||||| || ||||||||||| ||||| Sbjct 3494171 TCAACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3494223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424888991510016