Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq27 109 6e-19 seq202 98.7 1e-15 seq223 95.1 1e-14 seq77 86.0 7e-12 >seq27 Length=21973199 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||||||||| || ||||| ||| ||| || || || || ||| Sbjct 12295424 GTGAAAATGTAACGAGGGCTTGCAGCGTCTTTGCCGCCATGAAGCCGAGTCCCAAACTGT 12295483 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| |||||||||||| ||||||||||| ||| Sbjct 12295484 CCAATGGGCTGAAGTAAGTTAATGTTGTTACTGCCCACAAAGTTCTGAGCCAAGTTCACA 12295543 Query 117425 ATCGT 117429 || || Sbjct 12295544 ATAGT 12295548 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| || | ||| || || || ||||| || ||||| || ||||||||| Sbjct 12295424 GTGAAAATGTAACGAGGGCTTGCAGCGTCTTTGCCGCCATGAAGCCGAGTCCCAAACTGT 12295483 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||| | |||||| |||||| || ||||||||||| |||||| Sbjct 12295484 CCAATGGGCTGAAGTAAGTTAATGTTGTTACTGCCCACAAAGTTCTGAGCCAAGTTCACA 12295543 Query 152149 ATCGT 152153 || || Sbjct 12295544 ATAGT 12295548 >seq202 Length=5697000 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| ||||| | || ||||||||||| || | ||||| Sbjct 3890749 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGGCCTCTCTTCT 3890690 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 ||| ||| || || ||| || || ||| |||||| || ||||| ||| |||||||| Sbjct 3890689 TCAGCCAGAAAATCGCAGCAAAAGATCCAGAGAAGAAAATTCCTTCTACAGCCGCAAAGG 3890630 Query 74890 CGAC 74893 | || Sbjct 3890629 CTAC 3890626 >seq223 Length=5023716 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||||| ||||||||||| ||||| || ||||| Sbjct 3965824 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3965765 Query 74832 AACCAAAAGA-TGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || | || | || || |||||| |||||||| ||||| || |||||||| Sbjct 3965764 AGCCAGAATATTGACGCA-AAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGC 3965706 Query 74891 GACAAGGCGTT 74901 |||| |||| Sbjct 3965705 TACAACACGTT 3965695 >seq77 Length=15139199 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | ||||| | ||| |||||||| ||||| || |||||||| Sbjct 14079548 GTGAAGATGTATCGAGGACTGGCAGAATCTTTGCCACCATGCAGCCTAGTACCAAACTGA 14079607 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| || | | ||||| | || ||| |||||| ||||||||||||||||| | | Sbjct 14079608 CCAATAGGTTGCAAAAGGTTCAAATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 14079667 Query 152149 ATCGT 152153 || || Sbjct 14079668 ATGGT 14079672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547156025126400