Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq200 190 2e-43 seq2236 100 3e-16 seq28 86.0 8e-12 seq16 86.0 8e-12 >seq200 Length=5741990 Score = 190 bits (210), Expect = 2e-43 Identities = 377/552 (68%), Gaps = 6/552 (1%) Strand=Plus/Plus Query 32556 CTTAATCTTTATATATTAACTGAATTATTAATAGCCTC-TACAGCTAAAGGATATAGTTA 32614 |||||||||| ||| || | || ||||| |||| || || | | ||||||||| || Sbjct 266690 CTTAATCTTTTTATCTTCAGAGAGTTATTCATAGGATCATATAA-TGCAGGATATAGCTA 266748 Query 32615 TATATGCCAGCCTATTGATTACTCTGAAGACATCTATGAAATCAGAATAGCCAGAGCCTT 32674 | | |||||| | | ||||| || || | | |||| |||| ||||| | | Sbjct 266749 TGTTTGCCAGAGTGTGGATTATTCCGATAATGTTCGTGAAGTCAGGATAGCTGCTGGTCT 266808 Query 32675 GTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATAC--TATTTTCTTCATAATG 32732 ||||| || ||| | |||||||| | ||||| |||| | |||||| || ||| | Sbjct 266809 GTGGTGGTACTTTGTTTCTAAAGGAGTTCAATATTTAGACAGAGTATTTTTTTTATACTA 266868 Query 32733 AGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACT 32792 ||||||||| ||||||| || | ||||| || || |||| ||| |||||||| Sbjct 266869 AGAAAGAAAAACCACCAAGTCTCTTTCCTTCACGTGTATCATCATTGTACAATGTTTACA 266928 Query 32793 TTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACAGGCATTTTTTGGAGCACAGATA 32852 || | |||| || ||||| ||| | ||||| ||||| |||||||||||||| ||||| Sbjct 266929 TTGTGGTGGACTGGAATTAAGTGGGTAGCAGGGGGACAAGCATTTTTTGGAGCCCAGATG 266988 Query 32853 AATTCTTTTATACATGTTATAATGTATAGTTATTACGGATTAACAGCAATAGGTCCTTCC 32912 ||||| || || ||||| || | | | ||| || || ||||| | | || || | Sbjct 266989 AATTCCTTCATCCATGTGATTACGCACTCTTACTATGGCTTAACTGTGTTTGGCCCATGG 267048 Query 32913 TTGCGAAAATATCTATGGTGGAAAAAATATTTAACTATCATACAATTGATGCAGTTTCA- 32971 | | || ||||| ||||||||| ||| | || || | || || | ||||| || Sbjct 267049 ATTCAGAATTATCTTTGGTGGAAACTATACCTGACCATGTTGCAGCTGGTTCAGTTCCAC 267108 Query 32972 TTTAGCAATAGGTCATACAGCAATGTCTATATATATAGATTGTCCGTTCCCTAGATGGAT 33031 | | || || | || |||||| |||| | | | || | |||||||| | |||||| Sbjct 267109 GTGACCACTA-GACACACAGCATCGTCTCTTTGGACTGACTACCCGTTCCCCAAATGGAT 267167 Query 33032 ACAGTGGGCTGTTATTATATATTCTATCACCTTTATCATCCTTTTTGGCAACTTTTATCT 33091 || |||| | ||| | || | |||| ||| || |||| ||| ||||| ||| | Sbjct 267168 GCACTGGGAAATGATTGTCTACGCCATCAGCTTCATATTCCTCTTTCTTAACTTCTATAT 267227 Query 33092 CAGGACATATAA 33103 ||||||| || Sbjct 267228 GTGGACATACAA 267239 >seq2236 Length=6892 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATTTTTTCAAATATAAGTTGTGCTACTCTATCGCCC 22694 ||||| ||||||||||| || |||| | ||||| ||||| | | ||| || Sbjct 2851 ACTTCCTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGATCAACC 2792 Query 22695 TTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCCCTG 22754 || ||||| |||| || || | ||||||||| | | | ||| | |||||| ||| Sbjct 2791 TTTTTTACTCCAAATTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTG 2732 Query 22755 TAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCCGAT 22814 |||||| |||||||||||| || |||||||| || ||||| || ||||| || || Sbjct 2731 TAATCTTCATCTATCACACCAGCTCCTACATCTATGAAATGTTTTTCAGCCAAGCCAGAA 2672 Query 22815 CTAGGAGATATTCTTCCATA 22834 | |||| || |||| |||| Sbjct 2671 CGTGGAGCTACTCTTTCATA 2652 >seq28 Length=22341012 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 22688 ATCGCCCTTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATT 22747 ||| | ||| ||||| | |||| || || | ||||||||| | | | ||| || || Sbjct 17268677 ATCACTCTTTTTTACTTCAAATTTTTCTTTGCCAAAATTAAACAGTATGACACCAATGTT 17268736 Query 22748 TCCCCTGTAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAA 22807 ||| ||||||||| |||||||||||| | ||||||| || ||||| || ||||| Sbjct 17268737 TCCTCTGTAATCTTCATCTATCACACCAGTTACTACATCTATGAAATGTTTTGCAGCCAA 17268796 Query 22808 TCCCGATCTAGGAGATATTCTTCCATA 22834 || || | |||| || ||||||||| Sbjct 17268797 GCCAGAACGTGGAGCTACTCTTCCATA 17268823 >seq16 Length=30800738 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 22664 TTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAAAATACATCCTTACTAAA 22723 |||| | ||||| ||||| | | ||| ||||| ||||| | |||| || || | ||| Sbjct 11695275 TTCACAAATAAGCTGTGCAATCCGATCACCCTTTTTTACTTCAAATTTTTCTTTGCCAAA 11695334 Query 22724 ATTAAATAACAATATACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGCCTAC 22783 |||||||| | | ||| | |||||| ||||||||| |||||||||||| | ||||| Sbjct 11695335 ATTAAATAGTATGACACCAACATTTCCTCTGTAATCTTCATCTATCACACCAACTCCTAC 11695394 Query 22784 AT 22785 || Sbjct 11695395 AT 11695396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603114691384320