Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq108 288 1e-72 >seq108 Length=12252355 Score = 288 bits (318), Expect = 1e-72 Identities = 632/942 (67%), Gaps = 9/942 (1%) Strand=Plus/Minus Query 13608 GACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGAC-AGGGGGTATCTCGT 13666 |||||| | |||||||| ||||||| ||||| | || ||| || ||| || | Sbjct 7342547 GACTACATAAACATGACCAGGGACTGCGCATCCTTCATCAA-GACTAGTAAATATATCAT 7342489 Query 13667 GAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCA 13726 | |||||| ||| ||||||| || || ||||| || || || || ||| | ||||| Sbjct 7342488 GGAGCCCCTTAGCAAAGAAGAGGCGGAATTCCCCATTGCATATTCCATAGTGGTTCACCA 7342429 Query 13727 CAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTG 13786 ||| ||||| ||| | || | ||| |||||||||||||| || ||||| |||| || Sbjct 7342428 CAAAATCGAAATGCTGGACAGGCTCTTGAGGGCCATCTACATGCCTCAGAATTTCTATTG 7342369 Query 13787 CGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAG 13846 | | ||||| ||| || || | || ||| | | | || || ||| || Sbjct 7342368 CATACACGTAGACAAAAAATCGGATGATTCTTTCTTGGGTGCAGTGATGGGCATTGCGTC 7342309 Query 13847 GTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAG 13906 || ||| |||||| | ||||| || |||| | ||||||||| | |||||||| Sbjct 7342308 CTGTTTCGGCAACGTGTTCGTGGCCAGCCAGCTGGAGAGCGTGGTGTATGCGTCCTGGAG 7342249 Query 13907 TCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAG 13966 || || ||||||||||||| |||||| ||||||| || | | || |||| Sbjct 7342248 CCGGGTCCAGGCCGACCTCAATTGCATGCAGGACCTGCACAGAACGAGCACCACCTGGAA 7342189 Query 13967 GTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026 |||||| ||||||| ||||| ||||| |||||| | || || |||||||||||||| || Sbjct 7342188 GTACCTCATCAACCTCTGCGGCATGGATTTCCCGATTAAAACGAACCTGGAGATCGTCCG 7342129 Query 14027 GGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAA 14086 ||| ||| ||||| || | ||| ||||| | || |||||| | | || Sbjct 7342128 CAAGCTCAAGTCCCTGATGGGGGAAAACAATCTGGAAACGGAAAAAATGCCCGCCAATAA 7342069 Query 14087 GCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGG 14146 | | | | | |||| | | | || | | || || | || ||||| || Sbjct 7342068 GGAGGAAAGGTGGAAGAAGCGTTATGAAGTCGTGAATGGGA---TGCTCGTGAACACGGG 7342012 Query 14147 CAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGC 14206 | |||| | | |||||| || | |||||||| | || | ||| || || | Sbjct 7342011 GACTGACAAAGGGCGGCCGCCCATCCAAACTCCCATCTTCTCCGGCAGCGCCTATTTCGT 7341952 Query 14207 GGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCA 14266 ||||| | || | ||||| | || || | | |||| | | || |||||| | Sbjct 7341951 GGTCAGCAGGAGCTACGTGGCTTATGTTCTTGAAAATGAGCGGATCCACCATCTCATGGA 7341892 Query 14267 CTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTA 14326 ||| | ||||||| ||||||||||| ||| | || ||||||||| | ||||| ||| Sbjct 7341891 GTGGGCCAAGGACACTTACAGCCCCGATGAGTATCTCTGGGCCACCATCCAGAGGATG-- 7341834 Query 14327 CGGGACGCCC--GGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCC 14384 | ||| |||| || | | |||||| | | |||||||||| ||||||||| |||| Sbjct 7341833 CCGGATGCCCCTGGTGCGCTCCCCGCTAGCCCCAAGTACGACTTGTCGGACATGCAGGCC 7341774 Query 14385 AAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTAC 14444 | || | ||||||||||||||||| | ||||| || ||| || || |||| ||| Sbjct 7341773 ATCGTGCGCTTCGTCAAGTGGCACTATTTTGAGGGCGACGTCACCAAGGGCGCCCCATAC 7341714 Query 14445 CCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAG 14504 || || ||| ||| | || || | | | | ||| ||||||| | || ||| ||||| Sbjct 7341713 CCACCCTGCAGCGGGGTGCATGTGCGCTCTGTGTGCGTCTTCGGTGCTGGAGACCTGAAG 7341654 Query 14505 TGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 ||| || | || | ||| |||| ||||||||||| ||| Sbjct 7341653 TGGATGCTGCGCCAGCATCACTTGTTTGCCAACAAGTTTGAC 7341612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658667002183680